RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ORMDL3Q8N138 153 aa13.45□□□□□ -0.26
CCDC88C-210ENST00000555995 KRTAP4-5Q9BYR2 181 aa13.45□□□□□ -0.26
CCDC88C-210ENST00000555995 ABCA13Q86UQ4 5058 aa13.44□□□□□ -0.26
CCDC88C-210ENST00000555995 FAM229AH3BQW9 127 aa13.44□□□□□ -0.26
CCDC88C-210ENST00000555995 CHCHD10Q8WYQ3 142 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-210ENST00000555995 SMIM2Q9BVW6 85 aa13.44□□□□□ -0.26
CCDC88C-210ENST00000555995 CSDC2Q9Y534 153 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-210ENST00000555995 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-210ENST00000555995 hDV102S1A0JD36 115 aa13.43□□□□□ -0.26
CCDC88C-210ENST00000555995 GAGE12HA6NDE8 117 aa13.43□□□□□ -0.26
CCDC88C-210ENST00000555995 FAM30AQ9NZY2 134 aa13.43□□□□□ -0.26
CCDC88C-210ENST00000555995 LAMTOR2Q9Y2Q5 125 aa13.43□□□□□ -0.26
CCDC88C-210ENST00000555995 CNBPP62633 177 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-210ENST00000555995 Q5VSD8 79 aa13.42□□□□□ -0.26
CCDC88C-210ENST00000555995 IMMP2LQ96T52 175 aa13.42□□□□□ -0.26
CCDC88C-210ENST00000555995 CDC42SE2Q9NRR3 84 aa13.42□□□□□ -0.26
CCDC88C-210ENST00000555995 TMEM218A2RU14 115 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 CCL25O15444 150 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 SS18Q15532 418 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 LINC01620Q4KN68 170 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 ZNF664Q8N3J9 261 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 C9orf163Q8N9P6 203 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 TIMM21Q9BVV7 248 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 KRTAP17-1Q9BYP8 105 aa13.41□□□□□ -0.26
CCDC88C-210ENST00000555995 DNAH8Q96JB1 4490 aa13.4□□□□□ -0.26
CCDC88C-210ENST00000555995 TMEM136Q6ZRR5 245 aa13.4□□□□□ -0.26
CCDC88C-210ENST00000555995 CTDSP1Q9GZU7 261 aa13.4□□□□□ -0.26
CCDC88C-210ENST00000555995 LINC00959A0A1B0GUT2 108 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 NPYP01303 97 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 HAMPP81172 84 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 PRELID3AQ96N28 172 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 CHAC1Q9BUX1 264 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 SEC11CQ9BY50 192 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 UBE2D4Q9Y2X8 147 aa13.39□□□□□ -0.27
CCDC88C-210ENST00000555995 SMR3BP02814 79 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-210ENST00000555995 TRAV9-1A0A075B6T8 112 aa13.37□□□□□ -0.27
CCDC88C-210ENST00000555995 ADCYAP1P18509 176 aa13.37□□□□□ -0.27
CCDC88C-210ENST00000555995 COMMD7Q86VX2 200 aa13.37□□□□□ -0.27
CCDC88C-210ENST00000555995 C1orf196B1AJZ1 125 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 RAB5AP20339 215 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 XCL1P47992 114 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 FOXI1Q12951 378 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 SCXQ7RTU7 201 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 C15orf56Q8N910 161 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 SPANXA1Q9NS26 97 aa13.36□□□□□ -0.27
CCDC88C-210ENST00000555995 IGHV3-64A0A075B6Q5 118 aa13.35□□□□□ -0.27
CCDC88C-210ENST00000555995 CD164L2Q6UWJ8 174 aa13.35□□□□□ -0.27
CCDC88C-210ENST00000555995 MAP1LC3AQ9H492 121 aa13.35□□□□□ -0.27
CCDC88C-210ENST00000555995 VPS13BQ7Z7G8 4022 aa13.35□□□□□ -0.27
CCDC88C-210ENST00000555995 GVQW2A0A096LPI5 108 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-210ENST00000555995 PLA2G1BP04054 148 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-210ENST00000555995 PKIGQ9Y2B9 76 aa13.34□□□□□ -0.27
CCDC88C-210ENST00000555995 IGHV1-58A0A0C4DH39 117 aa13.33□□□□□ -0.28
CCDC88C-210ENST00000555995 PRSS47A8MTI9 375 aa13.33□□□□□ -0.28
CCDC88C-210ENST00000555995 S100PP25815 95 aa13.33□□□□□ -0.28
CCDC88C-210ENST00000555995 LINC00528Q8N1L1 170 aa13.32□□□□□ -0.28
CCDC88C-210ENST00000555995 INAFM2P0DMQ5 153 aa13.31□□□□□ -0.28
CCDC88C-210ENST00000555995 Q6ZUT4 128 aa13.31□□□□□ -0.28
CCDC88C-210ENST00000555995 K7EMI3 77 aa13.3□□□□□ -0.28
CCDC88C-210ENST00000555995 IFI27P40305 119 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-210ENST00000555995 MRPS36P82909 103 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-210ENST00000555995 CIRBP-AS1Q8TBR5 109 aa13.3□□□□□ -0.28
CCDC88C-210ENST00000555995 MALP21145 153 aa13.29□□□□□ -0.28
CCDC88C-210ENST00000555995 RPL39P62891 51 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-210ENST00000555995 COX19Q49B96 90 aa13.29□□□□□ -0.28
CCDC88C-210ENST00000555995 HIGD2BQ4VC39 106 aa13.29□□□□□ -0.28
CCDC88C-210ENST00000555995 SDIM1Q6ZPB5 146 aa13.29□□□□□ -0.28
CCDC88C-210ENST00000555995 TRAV13-1A0A0B4J241 112 aa13.28□□□□□ -0.28
CCDC88C-210ENST00000555995 COX7A2LO14548 114 aa13.28□□□□□ -0.28
CCDC88C-210ENST00000555995 RHEBQ15382 184 aa13.28□□□□□ -0.28
CCDC88C-210ENST00000555995 Q8N8P6 123 aa13.28□□□□□ -0.28
CCDC88C-210ENST00000555995 ZNF561-AS1K7EIQ3 104 aa13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 ORMDL2Q53FV1 153 aa13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 C10orf91Q5T1B1 145 aa13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 NXT2Q9NPJ8 142 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 CARHSP1Q9Y2V2 147 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 PYGO1Q9Y3Y4 419 aa13.27□□□□□ -0.29
CCDC88C-210ENST00000555995 CIRBPQ14011 172 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-210ENST00000555995 RNASE13Q5GAN3 156 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-210ENST00000555995 LOC389332A0A1B0GUA5 103 aa13.25□□□□□ -0.29
CCDC88C-210ENST00000555995 APOMO95445 188 aa13.25□□□□□ -0.29
CCDC88C-210ENST00000555995 SLPIP03973 132 aa13.25□□□□□ -0.29
CCDC88C-210ENST00000555995 G0S2P27469 103 aa13.25□□□□□ -0.29
CCDC88C-210ENST00000555995 CYSLTR1Q9Y271 337 aa13.25□□□□□ -0.29
CCDC88C-210ENST00000555995 FAT1Q14517 4588 aa13.24□□□□□ -0.29
CCDC88C-210ENST00000555995 IFITM10A6NMD0 228 aa13.24□□□□□ -0.29
CCDC88C-210ENST00000555995 MT-ND6P03923 174 aa13.23□□□□□ -0.29
CCDC88C-210ENST00000555995 NDUFA5Q16718 116 aa13.23□□□□□ -0.29
CCDC88C-210ENST00000555995 CARD19Q96LW7 228 aa13.23□□□□□ -0.29
CCDC88C-210ENST00000555995 GNB1LQ9BYB4 327 aa13.23□□□□□ -0.29
CCDC88C-210ENST00000555995 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-210ENST00000555995 NPSP0C0P6 89 aa13.22□□□□□ -0.29
CCDC88C-210ENST00000555995 TMEM141Q96I45 108 aa13.22□□□□□ -0.29
CCDC88C-210ENST00000555995 C2orf66Q6UXQ4 117 aa13.21□□□□□ -0.29
CCDC88C-210ENST00000555995 Q6ZN92 141 aa13.21□□□□□ -0.29
CCDC88C-210ENST00000555995 RPS10P5Q9NQ39 176 aa13.21□□□□□ -0.29
CCDC88C-210ENST00000555995 SYCNQ0VAF6 134 aa13.2□□□□□ -0.3
CCDC88C-210ENST00000555995 TEX43Q6ZNM6 134 aa13.2□□□□□ -0.3
CCDC88C-210ENST00000555995 OR10D4PQ8NGN7 298 aa13.2□□□□□ -0.3
CCDC88C-210ENST00000555995 SPACA4Q8TDM5 124 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms