RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TRPT1Q86TN4 253 aaKnown RBP8.49□□□□□ -1.05
SHMT2-212ENST00000554467 PPDPFQ9H3Y8 114 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 MAST4O15021 2626 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 SDHAF1A6NFY7 115 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 EIF4EBP3O60516 100 aaPredicted RBP8.49□□□□□ -1.05
SHMT2-212ENST00000554467 NDUFA7O95182 113 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 C3orf56Q8N813 242 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 BAALCQ8WXS3 180 aa8.49□□□□□ -1.05
SHMT2-212ENST00000554467 PF4P02776 101 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 VCX2Q9H322 139 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 A8MTW9 85 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 TMEM262E9PQX1 116 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 INSP01308 110 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 OPRPNQ99935 248 aaPredicted RBP8.48□□□□□ -1.05
SHMT2-212ENST00000554467 NEXN-AS1Q8NBZ9 246 aa8.48□□□□□ -1.05
SHMT2-212ENST00000554467 BAHCC1Q9P281 2608 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 M0QY20 66 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 Q6ZSN1 163 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 TRAV25A0A0B4J276 109 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 C1orf158Q8N1D5 194 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 TOMM6Q96B49 74 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 FBN1P35555 2871 aaKnown RBP8.47□□□□□ -1.05
SHMT2-212ENST00000554467 TRAV12-1A0A0B4J245 112 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 IGLV1-51P01701 117 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 TTC32Q5I0X7 151 aa8.47□□□□□ -1.05
SHMT2-212ENST00000554467 SLC25A20O43772 301 aa8.46□□□□□ -1.05
SHMT2-212ENST00000554467 SNCGO76070 127 aa8.46□□□□□ -1.05
SHMT2-212ENST00000554467 POM121L12Q8N7R1 296 aa8.46□□□□□ -1.05
SHMT2-212ENST00000554467 H7C2G1 150 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 POLR2KP53803 58 aaKnown RBP8.45□□□□□ -1.06
SHMT2-212ENST00000554467 C11orf72Q8NBR9 251 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 A0A0J9YY99 117 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 C11orf86A6NJI1 115 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 C9JAW5 83 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 ZNF415Q09FC8 603 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 MEIG1Q5JSS6 88 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 TEX49A0A1B0GTD5 131 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 M0R2P5 195 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 IGHV3-30P01768 117 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 IGHV3-30-5P0DP03 117 aa8.45□□□□□ -1.06
SHMT2-212ENST00000554467 IGHV3-53P01767 116 aa8.44□□□□□ -1.06
SHMT2-212ENST00000554467 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-212ENST00000554467 GIG44P09565 113 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-212ENST00000554467 RNASE13Q5GAN3 156 aaKnown RBP8.44□□□□□ -1.06
SHMT2-212ENST00000554467 Q6Q795 121 aa8.44□□□□□ -1.06
SHMT2-212ENST00000554467 C10orf126Q8N4M7 172 aa8.44□□□□□ -1.06
SHMT2-212ENST00000554467 NTN5Q8WTR8 489 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-212ENST00000554467 TRGV1A0A0A0MS02 117 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 VCYO14598 125 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 SCGB1C2P0DMR2 95 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 TSPEAR-AS2P59090 65 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 C19orf73Q9NVV2 129 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 PPP1R17O96001 155 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 CHCHD5Q9BSY4 110 aa8.43□□□□□ -1.06
SHMT2-212ENST00000554467 IGHV3-38A0A0C4DH36 116 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 M0QXV9 152 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 LINC00482Q8N8I6 264 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 C15orf53Q8NAA6 179 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 TSHBP01222 138 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 Q6ZTI0 123 aa8.42□□□□□ -1.06
SHMT2-212ENST00000554467 HERVK_113P61574 105 aa8.41□□□□□ -1.06
SHMT2-212ENST00000554467 COL6A5A8TX70 2615 aa8.41□□□□□ -1.06
SHMT2-212ENST00000554467 TRBV27A0A0K0K1C4 114 aa8.41□□□□□ -1.06
SHMT2-212ENST00000554467 BEAN1Q3B7T3 259 aa8.41□□□□□ -1.06
SHMT2-212ENST00000554467 NOP10Q9NPE3 64 aaKnown RBP8.41□□□□□ -1.06
SHMT2-212ENST00000554467 PRO1854Q9UHT4 67 aa8.41□□□□□ -1.06
SHMT2-212ENST00000554467 IGLV4-69A0A075B6H9 119 aa8.4□□□□□ -1.06
SHMT2-212ENST00000554467 PMVKQ15126 192 aa8.4□□□□□ -1.06
SHMT2-212ENST00000554467 AMELXQ99217 191 aa8.4□□□□□ -1.06
SHMT2-212ENST00000554467 CEMP1Q6PRD7 247 aaPredicted RBP8.4□□□□□ -1.07
SHMT2-212ENST00000554467 TRBV6-5A0A0K0K1A5 114 aa8.39□□□□□ -1.07
SHMT2-212ENST00000554467 LYRM7Q5U5X0 104 aa8.39□□□□□ -1.07
SHMT2-212ENST00000554467 LGALS3P17931 250 aaKnown RBP8.39□□□□□ -1.07
SHMT2-212ENST00000554467 SLC25A29Q8N8R3 303 aa8.39□□□□□ -1.07
SHMT2-212ENST00000554467 NOTCH1P46531 2555 aa8.39□□□□□ -1.07
SHMT2-212ENST00000554467 IGHV3-33P01772 117 aa8.38□□□□□ -1.07
SHMT2-212ENST00000554467 ZNRF2Q8NHG8 242 aa8.38□□□□□ -1.07
SHMT2-212ENST00000554467 IGIPA6NJ69 53 aa8.38□□□□□ -1.07
SHMT2-212ENST00000554467 TMEM263Q8WUH6 116 aaKnown RBP8.38□□□□□ -1.07
SHMT2-212ENST00000554467 I3L3M4 83 aa8.38□□□□□ -1.07
SHMT2-212ENST00000554467 NPC2P61916 151 aa8.38□□□□□ -1.07
SHMT2-212ENST00000554467 LOC107984640A0A0U1RRK4 108 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 A4D1N5 150 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 SPXQ9BT56 116 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 TRAV8-4A0A0B4J246 113 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 A0A0J9YXV3 536 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 LINC00694P0DN24 101 aa8.37□□□□□ -1.07
SHMT2-212ENST00000554467 PRSS2P07478 247 aa8.36□□□□□ -1.07
SHMT2-212ENST00000554467 RPL13AP40429 203 aaKnown RBP8.36□□□□□ -1.07
SHMT2-212ENST00000554467 Q1RN00 199 aa8.36□□□□□ -1.07
SHMT2-212ENST00000554467 CSDC2Q9Y534 153 aaKnown RBP8.36□□□□□ -1.07
SHMT2-212ENST00000554467 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.36□□□□□ -1.07
SHMT2-212ENST00000554467 IGKV2-29A2NJV5 120 aaPredicted RBP8.36□□□□□ -1.07
SHMT2-212ENST00000554467 J3QQQ9 107 aa8.36□□□□□ -1.07
SHMT2-212ENST00000554467 LINC01620Q4KN68 170 aa8.35□□□□□ -1.07
SHMT2-212ENST00000554467 CSNK1G2-AS1Q8NCQ2 148 aa8.35□□□□□ -1.07
SHMT2-212ENST00000554467 LINC01600Q96MT4 127 aa8.35□□□□□ -1.07
SHMT2-212ENST00000554467 LINC00467Q9BRT7 94 aa8.35□□□□□ -1.07
SHMT2-212ENST00000554467 RS1O15537 224 aa8.35□□□□□ -1.07
SHMT2-212ENST00000554467 C20orf203Q8NBC4 194 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 303.5 ms