RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 NRACQ8N912 160 aa9.45□□□□□ -0.9
LINC00661-203ENST00000549131 IGHV3-64A0A075B6Q5 118 aa9.44□□□□□ -0.9
LINC00661-203ENST00000549131 A0A1B0GW15 77 aa9.44□□□□□ -0.9
LINC00661-203ENST00000549131 PANO1I0J062 215 aa9.44□□□□□ -0.9
LINC00661-203ENST00000549131 XCL1P47992 114 aa9.44□□□□□ -0.9
LINC00661-203ENST00000549131 MRPL51Q4U2R6 128 aaKnown RBP9.44□□□□□ -0.9
LINC00661-203ENST00000549131 FAM104BQ5XKR9 115 aa9.44□□□□□ -0.9
LINC00661-203ENST00000549131 VCYO14598 125 aa9.43□□□□□ -0.9
LINC00661-203ENST00000549131 PPP1R2P9O14990 202 aa9.43□□□□□ -0.9
LINC00661-203ENST00000549131 SDIM1Q6ZPB5 146 aa9.43□□□□□ -0.9
LINC00661-203ENST00000549131 MRPL52Q86TS9 123 aaKnown RBP9.43□□□□□ -0.9
LINC00661-203ENST00000549131 KIR2DL4Q99706 377 aa9.43□□□□□ -0.9
LINC00661-203ENST00000549131 LINC00959A0A1B0GUT2 108 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 CCL25O15444 150 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 SLPIP03973 132 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 S100A8P05109 93 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 HBBP68871 147 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 FOXI1Q12951 378 aa9.42□□□□□ -0.9
LINC00661-203ENST00000549131 GVQW2A0A096LPI5 108 aaPredicted RBP9.41□□□□□ -0.9
LINC00661-203ENST00000549131 J3QL48 77 aa9.41□□□□□ -0.9
LINC00661-203ENST00000549131 CKS2P33552 79 aa9.41□□□□□ -0.9
LINC00661-203ENST00000549131 RPL37AP61513 92 aaKnown RBP9.41□□□□□ -0.9
LINC00661-203ENST00000549131 SS18Q15532 418 aa9.41□□□□□ -0.9
LINC00661-203ENST00000549131 ZNF664Q8N3J9 261 aa9.41□□□□□ -0.9
LINC00661-203ENST00000549131 CDC42SE2Q9NRR3 84 aa9.41□□□□□ -0.9
LINC00661-203ENST00000549131 LINC00862A6NCI5 91 aa9.4□□□□□ -0.9
LINC00661-203ENST00000549131 F8W036 122 aa9.4□□□□□ -0.9
LINC00661-203ENST00000549131 CHTF8P0CG12 524 aa9.4□□□□□ -0.9
LINC00661-203ENST00000549131 KRTAP10-4P60372 401 aaPredicted RBP9.4□□□□□ -0.9
LINC00661-203ENST00000549131 RAB14P61106 215 aa9.4□□□□□ -0.9
LINC00661-203ENST00000549131 SMAGPQ0VAQ4 97 aa9.4□□□□□ -0.9
LINC00661-203ENST00000549131 A0A1B0GXF2 115 aa9.39□□□□□ -0.91
LINC00661-203ENST00000549131 D6R8Y8 96 aa9.39□□□□□ -0.91
LINC00661-203ENST00000549131 CIRBPQ14011 172 aaKnown RBP9.39□□□□□ -0.91
LINC00661-203ENST00000549131 RNASE13Q5GAN3 156 aaKnown RBP9.39□□□□□ -0.91
LINC00661-203ENST00000549131 DPH3Q96FX2 82 aa9.39□□□□□ -0.91
LINC00661-203ENST00000549131 C20orf78Q9BR46 151 aa9.39□□□□□ -0.91
LINC00661-203ENST00000549131 UBE2D4Q9Y2X8 147 aa9.39□□□□□ -0.91
LINC00661-203ENST00000549131 TNFRSF6BO95407 300 aa9.38□□□□□ -0.91
LINC00661-203ENST00000549131 SPACA4Q8TDM5 124 aa9.38□□□□□ -0.91
LINC00661-203ENST00000549131 TMEM18Q96B42 140 aa9.38□□□□□ -0.91
LINC00661-203ENST00000549131 SMIM2Q9BVW6 85 aa9.38□□□□□ -0.91
LINC00661-203ENST00000549131 TRBV24-1A0A075B6N3 115 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 IGHV1-58A0A0C4DH39 117 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 NPYP01303 97 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 COX6A2Q02221 97 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 Q6ZUT4 128 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 ATP5L2Q7Z4Y8 100 aa9.37□□□□□ -0.91
LINC00661-203ENST00000549131 IGKV2-24A0A0C4DH68 120 aa9.36□□□□□ -0.91
LINC00661-203ENST00000549131 TCAPO15273 167 aa9.36□□□□□ -0.91
LINC00661-203ENST00000549131 RPL32P62910 135 aaKnown RBP9.36□□□□□ -0.91
LINC00661-203ENST00000549131 PNRC1Q12796 327 aaPredicted RBP9.36□□□□□ -0.91
LINC00661-203ENST00000549131 LINC00526Q96FQ7 95 aa9.36□□□□□ -0.91
LINC00661-203ENST00000549131 CSDC2Q9Y534 153 aaKnown RBP9.36□□□□□ -0.91
LINC00661-203ENST00000549131 PKHD1L1Q86WI1 4243 aa9.36□□□□□ -0.91
LINC00661-203ENST00000549131 A0A087WYN8 130 aa9.35□□□□□ -0.91
LINC00661-203ENST00000549131 TRAV13-1A0A0B4J241 112 aa9.35□□□□□ -0.91
LINC00661-203ENST00000549131 C1orf196B1AJZ1 125 aa9.35□□□□□ -0.91
LINC00661-203ENST00000549131 RPL39P62891 51 aaKnown RBP9.35□□□□□ -0.91
LINC00661-203ENST00000549131 KRTAP29-1A8MX34 341 aaPredicted RBP9.34□□□□□ -0.91
LINC00661-203ENST00000549131 ZNF561-AS1K7EIQ3 104 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 PHOX2AO14813 284 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 PPBPP02775 128 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 MALP21145 153 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 MAJINQ3KP22 176 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 ORMDL3Q8N138 153 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 PRSS3P2Q8NHM4 247 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 CARD19Q96LW7 228 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 TIMM21Q9BVV7 248 aa9.34□□□□□ -0.91
LINC00661-203ENST00000549131 COX7A2LO14548 114 aa9.33□□□□□ -0.92
LINC00661-203ENST00000549131 MT-ND4LP03901 98 aa9.33□□□□□ -0.92
LINC00661-203ENST00000549131 PRELID3AQ96N28 172 aa9.33□□□□□ -0.92
LINC00661-203ENST00000549131 A0A096LNI7 61 aa9.32□□□□□ -0.92
LINC00661-203ENST00000549131 ANAPC16Q96DE5 110 aa9.32□□□□□ -0.92
LINC00661-203ENST00000549131 PKIGQ9Y2B9 76 aa9.32□□□□□ -0.92
LINC00661-203ENST00000549131 LRP1Q07954 4544 aaKnown RBP9.32□□□□□ -0.92
LINC00661-203ENST00000549131 HNRNPA3P51991 378 aaKnown RBP9.31□□□□□ -0.92
LINC00661-203ENST00000549131 SYCNQ0VAF6 134 aa9.31□□□□□ -0.92
LINC00661-203ENST00000549131 CLLU1Q5K131 121 aa9.31□□□□□ -0.92
LINC00661-203ENST00000549131 TMEM136Q6ZRR5 245 aa9.31□□□□□ -0.92
LINC00661-203ENST00000549131 SPANXA1Q9NS26 97 aa9.31□□□□□ -0.92
LINC00661-203ENST00000549131 PLAC8Q9NZF1 115 aa9.31□□□□□ -0.92
LINC00661-203ENST00000549131 RAB5AP20339 215 aa9.3□□□□□ -0.92
LINC00661-203ENST00000549131 STPG4Q8N801 248 aa9.3□□□□□ -0.92
LINC00661-203ENST00000549131 C7orf33Q8WU49 177 aa9.3□□□□□ -0.92
LINC00661-203ENST00000549131 FAT3Q8TDW7 4589 aa9.3□□□□□ -0.92
LINC00661-203ENST00000549131 IGLV4-69A0A075B6H9 119 aa9.29□□□□□ -0.92
LINC00661-203ENST00000549131 C5orf38Q86SI9 138 aa9.29□□□□□ -0.92
LINC00661-203ENST00000549131 OPRPNQ99935 248 aaPredicted RBP9.29□□□□□ -0.92
LINC00661-203ENST00000549131 LOC389332A0A1B0GUA5 103 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 IFITM10A6NMD0 228 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 APOMO95445 188 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 IFI27P40305 119 aaPredicted RBP9.28□□□□□ -0.92
LINC00661-203ENST00000549131 CAMK2N2Q96S95 79 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 MAP1LC3AQ9H492 121 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 LINC00474Q9P2X8 69 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 LAMTOR2Q9Y2Q5 125 aa9.28□□□□□ -0.92
LINC00661-203ENST00000549131 OXTP01178 125 aa9.27□□□□□ -0.93
LINC00661-203ENST00000549131 MRPS36P82909 103 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms