RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 ANAPC16Q96DE5 110 aa7.7□□□□□ -1.18
HDAC4-216ENST00000544989 HMCN2Q8NDA2 5059 aa7.69□□□□□ -1.18
HDAC4-216ENST00000544989 TRBV24-1A0A075B6N3 115 aa7.69□□□□□ -1.18
HDAC4-216ENST00000544989 PHOX2AO14813 284 aa7.69□□□□□ -1.18
HDAC4-216ENST00000544989 CNBPP62633 177 aaKnown RBP7.69□□□□□ -1.18
HDAC4-216ENST00000544989 NRACQ8N912 160 aa7.69□□□□□ -1.18
HDAC4-216ENST00000544989 FAM30AQ9NZY2 134 aa7.69□□□□□ -1.18
HDAC4-216ENST00000544989 A0A1B0GXF2 115 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 hDV102S1A0JD36 115 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 SMKR1H3BMG3 65 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 CCL25O15444 150 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 GAS8-AS1O95177 125 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 MRPL54Q6P161 138 aaKnown RBP7.68□□□□□ -1.18
HDAC4-216ENST00000544989 UQCC3Q6UW78 93 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 C9orf163Q8N9P6 203 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 CHCHD10Q8WYQ3 142 aaPredicted RBP7.68□□□□□ -1.18
HDAC4-216ENST00000544989 CHAC1Q9BUX1 264 aa7.68□□□□□ -1.18
HDAC4-216ENST00000544989 CSDC2Q9Y534 153 aaKnown RBP7.68□□□□□ -1.18
HDAC4-216ENST00000544989 DNAH8Q96JB1 4490 aa7.67□□□□□ -1.18
HDAC4-216ENST00000544989 IGKV3OR2-268A0A0C4DH90 116 aa7.67□□□□□ -1.18
HDAC4-216ENST00000544989 GAGE12HA6NDE8 117 aa7.67□□□□□ -1.18
HDAC4-216ENST00000544989 SMR3BP02814 79 aaPredicted RBP7.67□□□□□ -1.18
HDAC4-216ENST00000544989 PLA2G1BP04054 148 aaKnown RBP7.67□□□□□ -1.18
HDAC4-216ENST00000544989 SS18Q15532 418 aa7.67□□□□□ -1.18
HDAC4-216ENST00000544989 TNFRSF6BO95407 300 aa7.66□□□□□ -1.18
HDAC4-216ENST00000544989 INAFM2P0DMQ5 153 aa7.66□□□□□ -1.18
HDAC4-216ENST00000544989 ZNF664Q8N3J9 261 aa7.66□□□□□ -1.18
HDAC4-216ENST00000544989 CDC42SE2Q9NRR3 84 aa7.66□□□□□ -1.18
HDAC4-216ENST00000544989 LINC00959A0A1B0GUT2 108 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 D6R8Y8 96 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 LINC01620Q4KN68 170 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 SCXQ7RTU7 201 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 ORMDL3Q8N138 153 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 TIMM21Q9BVV7 248 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 SMIM2Q9BVW6 85 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 PKIGQ9Y2B9 76 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 LAMTOR2Q9Y2Q5 125 aa7.65□□□□□ -1.18
HDAC4-216ENST00000544989 IGHV3-64A0A075B6Q5 118 aa7.64□□□□□ -1.19
HDAC4-216ENST00000544989 C1orf196B1AJZ1 125 aa7.64□□□□□ -1.19
HDAC4-216ENST00000544989 HAMPP81172 84 aa7.64□□□□□ -1.19
HDAC4-216ENST00000544989 CD164L2Q6UWJ8 174 aa7.64□□□□□ -1.19
HDAC4-216ENST00000544989 IMMP2LQ96T52 175 aa7.64□□□□□ -1.19
HDAC4-216ENST00000544989 RAB5AP20339 215 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 XCL1P47992 114 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 FOXI1Q12951 378 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 TMEM136Q6ZRR5 245 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 LINC00528Q8N1L1 170 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 CTDSP1Q9GZU7 261 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 UBE2D4Q9Y2X8 147 aa7.63□□□□□ -1.19
HDAC4-216ENST00000544989 FLG2Q5D862 2391 aaPredicted RBP7.63□□□□□ -1.19
HDAC4-216ENST00000544989 GVQW2A0A096LPI5 108 aaPredicted RBP7.62□□□□□ -1.19
HDAC4-216ENST00000544989 IGHV1-58A0A0C4DH39 117 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 SDIM1Q6ZPB5 146 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 C15orf56Q8N910 161 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 CIRBP-AS1Q8TBR5 109 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 PRELID3AQ96N28 172 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 SPANXA1Q9NS26 97 aa7.62□□□□□ -1.19
HDAC4-216ENST00000544989 TRAV9-1A0A075B6T8 112 aa7.61□□□□□ -1.19
HDAC4-216ENST00000544989 TMEM218A2RU14 115 aa7.61□□□□□ -1.19
HDAC4-216ENST00000544989 PRSS47A8MTI9 375 aa7.61□□□□□ -1.19
HDAC4-216ENST00000544989 NPYP01303 97 aa7.61□□□□□ -1.19
HDAC4-216ENST00000544989 IFITM2Q01629 132 aa7.6□□□□□ -1.19
HDAC4-216ENST00000544989 SEC11CQ9BY50 192 aa7.6□□□□□ -1.19
HDAC4-216ENST00000544989 MAP1LC3AQ9H492 121 aa7.6□□□□□ -1.19
HDAC4-216ENST00000544989 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
HDAC4-216ENST00000544989 K7EMI3 77 aa7.59□□□□□ -1.19
HDAC4-216ENST00000544989 COX7A2LO14548 114 aa7.59□□□□□ -1.19
HDAC4-216ENST00000544989 MALP21145 153 aa7.59□□□□□ -1.19
HDAC4-216ENST00000544989 MRPS36P82909 103 aaKnown RBP7.59□□□□□ -1.19
HDAC4-216ENST00000544989 CIRBPQ14011 172 aaKnown RBP7.59□□□□□ -1.19
HDAC4-216ENST00000544989 HIGD2BQ4VC39 106 aa7.59□□□□□ -1.19
HDAC4-216ENST00000544989 TRAV13-1A0A0B4J241 112 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 APOMO95445 188 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 SLPIP03973 132 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 S100PP25815 95 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 G0S2P27469 103 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 IFI27P40305 119 aaPredicted RBP7.58□□□□□ -1.2
HDAC4-216ENST00000544989 DPH3Q96FX2 82 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 LINC00474Q9P2X8 69 aa7.58□□□□□ -1.2
HDAC4-216ENST00000544989 RPL39P62891 51 aaKnown RBP7.57□□□□□ -1.2
HDAC4-216ENST00000544989 ORMDL2Q53FV1 153 aa7.57□□□□□ -1.2
HDAC4-216ENST00000544989 Q6ZUT4 128 aa7.57□□□□□ -1.2
HDAC4-216ENST00000544989 COMMD7Q86VX2 200 aa7.57□□□□□ -1.2
HDAC4-216ENST00000544989 NXT2Q9NPJ8 142 aaKnown RBP7.57□□□□□ -1.2
HDAC4-216ENST00000544989 PYGO1Q9Y3Y4 419 aa7.57□□□□□ -1.2
HDAC4-216ENST00000544989 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.57□□□□□ -1.2
HDAC4-216ENST00000544989 NPSP0C0P6 89 aa7.56□□□□□ -1.2
HDAC4-216ENST00000544989 ADCYAP1P18509 176 aa7.56□□□□□ -1.2
HDAC4-216ENST00000544989 COX19Q49B96 90 aa7.56□□□□□ -1.2
HDAC4-216ENST00000544989 Q8N8P6 123 aa7.56□□□□□ -1.2
HDAC4-216ENST00000544989 CARD19Q96LW7 228 aa7.56□□□□□ -1.2
HDAC4-216ENST00000544989 IFITM10A6NMD0 228 aa7.55□□□□□ -1.2
HDAC4-216ENST00000544989 F8WDY8 70 aa7.55□□□□□ -1.2
HDAC4-216ENST00000544989 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
HDAC4-216ENST00000544989 SPACA4Q8TDM5 124 aa7.55□□□□□ -1.2
HDAC4-216ENST00000544989 LOC389332A0A1B0GUA5 103 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 RPL37AP61513 92 aaKnown RBP7.54□□□□□ -1.2
HDAC4-216ENST00000544989 COX6A2Q02221 97 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 SYCNQ0VAF6 134 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 RHEBQ15382 184 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms