RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 IGHV1-58A0A0C4DH39 117 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 FAM168BA1KXE4 195 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 SH2D1AO60880 128 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 NDUFB6O95139 128 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 NKX2-5P52952 324 aaPredicted RBP2.77□□□□□ -1.97
LIMS1-214ENST00000542845 TMBIM6P55061 237 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 SPCS2Q15005 226 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 SPANXN1Q5VSR9 72 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 MTURNQ8N3F0 131 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 C5orf17Q8NAS9 161 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 OR10AG1Q8NH19 301 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 ZNF471Q9BX82 626 aaPredicted RBP2.77□□□□□ -1.97
LIMS1-214ENST00000542845 PPDPFQ9H3Y8 114 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 C11orf1Q9H5F2 150 aa2.77□□□□□ -1.97
LIMS1-214ENST00000542845 A0A087X002 238 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 M0R2T5 61 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 CCL25O15444 150 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 CFC1BP0CG36 223 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 ARL14EPLP0DKL9 152 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 CRIP1P50238 77 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 DNLZQ5SXM8 178 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 ADAMTSL4-AS1Q5T5F5 129 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 OR5A1Q8NGJ0 315 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 SCGB1C1Q8TD33 95 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 ISOC2Q96AB3 205 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 CAMK2N2Q96S95 79 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 RPP21Q9H633 154 aaKnown RBP2.76□□□□□ -1.97
LIMS1-214ENST00000542845 ANAPC11Q9NYG5 84 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 PYGO1Q9Y3Y4 419 aa2.76□□□□□ -1.97
LIMS1-214ENST00000542845 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.75□□□□□ -1.97
LIMS1-214ENST00000542845 IGKV2-29A2NJV5 120 aaPredicted RBP2.75□□□□□ -1.97
LIMS1-214ENST00000542845 XKRY2A2RUG3 117 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.75□□□□□ -1.97
LIMS1-214ENST00000542845 APOMO95445 188 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 MT1HP80294 61 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 MEF2BQ02080 365 aaPredicted RBP2.75□□□□□ -1.97
LIMS1-214ENST00000542845 COTL1Q14019 142 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 ASB16-AS1Q495Z4 193 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 FAM162BQ5T6X4 162 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 NUP35Q8NFH5 326 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 TSKUQ8WUA8 353 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 SMIM3Q9BZL3 60 aa2.75□□□□□ -1.97
LIMS1-214ENST00000542845 ATP6V1G2O95670 118 aa2.74□□□□□ -1.97
LIMS1-214ENST00000542845 NDUFV3P56181 108 aaKnown RBP2.74□□□□□ -1.97
LIMS1-214ENST00000542845 KRTAP10-6P60371 365 aaPredicted RBP2.74□□□□□ -1.97
LIMS1-214ENST00000542845 UBE2G2P60604 165 aa2.74□□□□□ -1.97
LIMS1-214ENST00000542845 LINC00304Q8N9R0 145 aa2.74□□□□□ -1.97
LIMS1-214ENST00000542845 SEC22CQ9BRL7 303 aa2.74□□□□□ -1.97
LIMS1-214ENST00000542845 LINC00959A0A1B0GUT2 108 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 CENPXA8MT69 81 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 M0QXV9 152 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 M0QY20 66 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 BCL2L11O43521 198 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 ZNF861PO60384 105 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 GCHFRP30047 84 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 CDC34P49427 236 aaPredicted RBP2.73□□□□□ -1.97
LIMS1-214ENST00000542845 DEFA1P59665 94 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 SEC61GP60059 68 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 UBE2G1P62253 170 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 SS18Q15532 418 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 Q86TA4 180 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 TMEM101Q96IK0 257 aa2.73□□□□□ -1.97
LIMS1-214ENST00000542845 FAM240BA0A1B0GVZ2 78 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 NAP1L6A6NFF2 107 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 IFITM10A6NMD0 228 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 PEX7O00628 323 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 SIX6O95475 246 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 KRTAP13-2Q52LG2 175 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 TRIQKQ629K1 86 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 RASL11AQ6T310 242 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 DEDD2Q8WXF8 326 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 BTF3L4Q96K17 158 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 AP1S3Q96PC3 154 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 OCR1Q9BZK8 76 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 NIT2Q9NQR4 276 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 ZFP30Q9Y2G7 519 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 V9GYH0 126 aa2.72□□□□□ -1.97
LIMS1-214ENST00000542845 C19orf71A6NCJ1 209 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 COX7A2LO14548 114 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 CXorf1O96002 111 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 STAG3L2P0CL84 134 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 STAG3L3P0CL85 134 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 S100A5P33763 92 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 IL15RAQ13261 267 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 C5orf38Q86SI9 138 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 PGLYRP4Q96LB8 373 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 IMMP2LQ96T52 175 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 TMEM167BQ9NRX6 74 aa2.71□□□□□ -1.98
LIMS1-214ENST00000542845 IGLV4-3A0A075B6K6 122 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 IGKV2D-26A0A0A0MRZ7 120 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 SNAI2O43623 268 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 ATP5LO75964 103 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 APCSP02743 223 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 OR5AL1P0C617 328 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 NTF3P20783 257 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 BTCP35070 178 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 SPAG11BQ08648 103 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 LINC00242Q5T6M2 205 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 KRTAP7-1Q8IUC3 87 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 LINC01561Q8N1V8 128 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms