RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 IGKV2-29A2NJV5 120 aaPredicted RBP16.51■□□□□ 0.23
CHFR-218ENST00000540963 CT83Q5H943 113 aa16.51■□□□□ 0.23
CHFR-218ENST00000540963 FAM210AQ96ND0 272 aa16.51■□□□□ 0.23
CHFR-218ENST00000540963 XCL1P47992 114 aa16.5■□□□□ 0.23
CHFR-218ENST00000540963 TEX261Q6UWH6 196 aa16.5■□□□□ 0.23
CHFR-218ENST00000540963 LINC00959A0A1B0GUT2 108 aa16.49■□□□□ 0.23
CHFR-218ENST00000540963 SDHAF1A6NFY7 115 aa16.49■□□□□ 0.23
CHFR-218ENST00000540963 PTTG1IPP53801 180 aa16.49■□□□□ 0.23
CHFR-218ENST00000540963 SYCNQ0VAF6 134 aa16.49■□□□□ 0.23
CHFR-218ENST00000540963 BTF3L4Q96K17 158 aa16.49■□□□□ 0.23
CHFR-218ENST00000540963 TRBV6-5A0A0K0K1A5 114 aa16.48■□□□□ 0.23
CHFR-218ENST00000540963 CCL25O15444 150 aa16.48■□□□□ 0.23
CHFR-218ENST00000540963 TMEM101Q96IK0 257 aa16.48■□□□□ 0.23
CHFR-218ENST00000540963 SMIM7Q9BQ49 75 aa16.48■□□□□ 0.23
CHFR-218ENST00000540963 EIF5A2Q9GZV4 153 aaKnown RBP16.48■□□□□ 0.23
CHFR-218ENST00000540963 ZNF561-AS1K7EIQ3 104 aa16.47■□□□□ 0.23
CHFR-218ENST00000540963 LINC00526Q96FQ7 95 aa16.47■□□□□ 0.23
CHFR-218ENST00000540963 C9JQL5 133 aa16.46■□□□□ 0.23
CHFR-218ENST00000540963 ZNF664Q8N3J9 261 aa16.46■□□□□ 0.23
CHFR-218ENST00000540963 TSKUQ8WUA8 353 aa16.46■□□□□ 0.23
CHFR-218ENST00000540963 OSTCQ9NRP0 149 aa16.46■□□□□ 0.23
CHFR-218ENST00000540963 LPAP08519 4548 aa16.46■□□□□ 0.22
CHFR-218ENST00000540963 LOC107984640A0A0U1RRK4 108 aa16.45■□□□□ 0.22
CHFR-218ENST00000540963 HIGD1CA8MV81 97 aa16.45■□□□□ 0.22
CHFR-218ENST00000540963 CD164L2Q6UWJ8 174 aa16.45■□□□□ 0.22
CHFR-218ENST00000540963 SMIM15Q7Z3B0 74 aa16.45■□□□□ 0.22
CHFR-218ENST00000540963 ISOC2Q96AB3 205 aa16.45■□□□□ 0.22
CHFR-218ENST00000540963 ZNF727A8MUV8 499 aa16.44■□□□□ 0.22
CHFR-218ENST00000540963 ESDP10768 282 aa16.44■□□□□ 0.22
CHFR-218ENST00000540963 SS18Q15532 418 aa16.44■□□□□ 0.22
CHFR-218ENST00000540963 V9GYV3 84 aa16.44■□□□□ 0.22
CHFR-218ENST00000540963 I3L3M4 83 aa16.43■□□□□ 0.22
CHFR-218ENST00000540963 TSHBP01222 138 aa16.43■□□□□ 0.22
CHFR-218ENST00000540963 RAB4AP20338 218 aa16.43■□□□□ 0.22
CHFR-218ENST00000540963 TMEM191AQ9H0A3 160 aa16.43■□□□□ 0.22
CHFR-218ENST00000540963 PSORS1C2Q9UIG4 136 aa16.43■□□□□ 0.22
CHFR-218ENST00000540963 A0A1B0GUT8 65 aa16.42■□□□□ 0.22
CHFR-218ENST00000540963 CAMPP49913 170 aa16.42■□□□□ 0.22
CHFR-218ENST00000540963 POLR2KP53803 58 aaKnown RBP16.42■□□□□ 0.22
CHFR-218ENST00000540963 PMCHP20382 165 aa16.4■□□□□ 0.22
CHFR-218ENST00000540963 SRSF3P84103 164 aaKnown RBP16.4■□□□□ 0.22
CHFR-218ENST00000540963 GAGE2BQ13066 116 aa16.4■□□□□ 0.22
CHFR-218ENST00000540963 MRPL52Q86TS9 123 aaKnown RBP16.4■□□□□ 0.22
CHFR-218ENST00000540963 AMN1Q8IY45 258 aa16.4■□□□□ 0.22
CHFR-218ENST00000540963 NUP35Q8NFH5 326 aa16.39■□□□□ 0.21
CHFR-218ENST00000540963 CDC42SE2Q9NRR3 84 aa16.39■□□□□ 0.21
CHFR-218ENST00000540963 TMEM242Q9NWH2 141 aa16.39■□□□□ 0.21
CHFR-218ENST00000540963 IGLV4-69A0A075B6H9 119 aa16.38■□□□□ 0.21
CHFR-218ENST00000540963 A0A1W2PNN7 141 aa16.38■□□□□ 0.21
CHFR-218ENST00000540963 MT-ND6P03923 174 aa16.38■□□□□ 0.21
CHFR-218ENST00000540963 MRAP2Q96G30 205 aa16.38■□□□□ 0.21
CHFR-218ENST00000540963 SMKR1H3BMG3 65 aa16.37■□□□□ 0.21
CHFR-218ENST00000540963 RPL23P62829 140 aaKnown RBP16.37■□□□□ 0.21
CHFR-218ENST00000540963 ST20Q9HBF5 79 aa16.37■□□□□ 0.21
CHFR-218ENST00000540963 TRBV27A0A0K0K1C4 114 aa16.35■□□□□ 0.21
CHFR-218ENST00000540963 APOMO95445 188 aa16.35■□□□□ 0.21
CHFR-218ENST00000540963 TMEM241Q24JQ0 296 aa16.35■□□□□ 0.21
CHFR-218ENST00000540963 NRACQ8N912 160 aa16.35■□□□□ 0.21
CHFR-218ENST00000540963 C9orf116Q5BN46 136 aaPredicted RBP16.34■□□□□ 0.21
CHFR-218ENST00000540963 BORCS7Q96B45 105 aa16.34■□□□□ 0.21
CHFR-218ENST00000540963 MALP21145 153 aa16.33■□□□□ 0.2
CHFR-218ENST00000540963 DIRC1Q969H9 104 aa16.33■□□□□ 0.2
CHFR-218ENST00000540963 C2orf48Q96LS8 159 aa16.33■□□□□ 0.2
CHFR-218ENST00000540963 C1orf196B1AJZ1 125 aa16.32■□□□□ 0.2
CHFR-218ENST00000540963 C1orf137Q5JT78 98 aa16.32■□□□□ 0.2
CHFR-218ENST00000540963 CAMK2N2Q96S95 79 aa16.32■□□□□ 0.2
CHFR-218ENST00000540963 COX7A2LO14548 114 aa16.31■□□□□ 0.2
CHFR-218ENST00000540963 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.3■□□□□ 0.2
CHFR-218ENST00000540963 RIGQ13278 110 aa16.3■□□□□ 0.2
CHFR-218ENST00000540963 SMIM27A0A1W2PRY6 76 aa16.29■□□□□ 0.2
CHFR-218ENST00000540963 FAM74A3Q4VXF1 159 aa16.29■□□□□ 0.2
CHFR-218ENST00000540963 CSDC2Q9Y534 153 aaKnown RBP16.29■□□□□ 0.2
CHFR-218ENST00000540963 C7orf77A4D0Y5 90 aa16.28■□□□□ 0.2
CHFR-218ENST00000540963 RNF151Q2KHN1 245 aa16.28■□□□□ 0.2
CHFR-218ENST00000540963 MRPL51Q4U2R6 128 aaKnown RBP16.28■□□□□ 0.2
CHFR-218ENST00000540963 PRR26Q8N8Z3 221 aa16.28■□□□□ 0.2
CHFR-218ENST00000540963 IGLV7-43P04211 117 aa16.27■□□□□ 0.2
CHFR-218ENST00000540963 ADIRFQ15847 76 aa16.27■□□□□ 0.2
CHFR-218ENST00000540963 FAM104BQ5XKR9 115 aa16.27■□□□□ 0.2
CHFR-218ENST00000540963 NAT8Q9UHE5 227 aa16.27■□□□□ 0.2
CHFR-218ENST00000540963 NAT8BQ9UHF3 227 aa16.27■□□□□ 0.2
CHFR-218ENST00000540963 VCYO14598 125 aa16.26■□□□□ 0.19
CHFR-218ENST00000540963 SMAGPQ0VAQ4 97 aa16.26■□□□□ 0.19
CHFR-218ENST00000540963 PHF5AQ7RTV0 110 aaKnown RBP16.26■□□□□ 0.19
CHFR-218ENST00000540963 RPL18AQ02543 176 aaKnown RBP16.25■□□□□ 0.19
CHFR-218ENST00000540963 IGLV1-50A0A075B6I6 118 aa16.24■□□□□ 0.19
CHFR-218ENST00000540963 H0Y9J4 135 aa16.24■□□□□ 0.19
CHFR-218ENST00000540963 SUMO2P61956 95 aaKnown RBP16.24■□□□□ 0.19
CHFR-218ENST00000540963 FAM104AQ969W3 186 aa16.23■□□□□ 0.19
CHFR-218ENST00000540963 UBE2D4Q9Y2X8 147 aa16.23■□□□□ 0.19
CHFR-218ENST00000540963 MUC2Q02817 5179 aa16.22■□□□□ 0.19
CHFR-218ENST00000540963 F8WDY8 70 aa16.21■□□□□ 0.19
CHFR-218ENST00000540963 PEA15Q15121 130 aa16.21■□□□□ 0.19
CHFR-218ENST00000540963 A0A0U1RQV1 116 aa16.2■□□□□ 0.18
CHFR-218ENST00000540963 RNASE13Q5GAN3 156 aaKnown RBP16.2■□□□□ 0.18
CHFR-218ENST00000540963 TRBV24-1A0A075B6N3 115 aa16.19■□□□□ 0.18
CHFR-218ENST00000540963 OR10D4PQ8NGN7 298 aa16.19■□□□□ 0.18
CHFR-218ENST00000540963 MRPL35Q9NZE8 188 aaKnown RBP16.19■□□□□ 0.18
CHFR-218ENST00000540963 A0A1B0GXF2 115 aa16.18■□□□□ 0.18
CHFR-218ENST00000540963 SPAG11BQ08648 103 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 3632.6 ms