RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, human

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC78-215	ENST00000538176	TCAP	O15273	167 aa		13.83	□□□□□ -0.2
CCDC78-215	ENST00000538176	IGHV3-64	A0A075B6Q5	118 aa		13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176		F8W036	122 aa		13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176	CAMP	P49913	170 aa		13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176	RAB14	P61106	215 aa		13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176	C20orf78	Q9BR46	151 aa		13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176	CSDC2	Q9Y534	153 aa	Known RBP	13.82	□□□□□ -0.2
CCDC78-215	ENST00000538176	TRBV24-1	A0A075B6N3	115 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	CCL25	O15444	150 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	SS18	Q15532	418 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	NRAC	Q8N912	160 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	TMEM18	Q96B42	140 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	CDC42SE2	Q9NRR3	84 aa		13.81	□□□□□ -0.2
CCDC78-215	ENST00000538176	CKS2	P33552	79 aa		13.8	□□□□□ -0.2
CCDC78-215	ENST00000538176	MRPL51	Q4U2R6	128 aa	Known RBP	13.8	□□□□□ -0.2
CCDC78-215	ENST00000538176	ZNF664	Q8N3J9	261 aa		13.8	□□□□□ -0.2
CCDC78-215	ENST00000538176	LINC00959	A0A1B0GUT2	108 aa		13.79	□□□□□ -0.2
CCDC78-215	ENST00000538176	RPL32	P62910	135 aa	Known RBP	13.79	□□□□□ -0.2
CCDC78-215	ENST00000538176	HBB	P68871	147 aa		13.79	□□□□□ -0.2
CCDC78-215	ENST00000538176	C15orf56	Q8N910	161 aa		13.79	□□□□□ -0.2
CCDC78-215	ENST00000538176	SMKR1	H3BMG3	65 aa		13.78	□□□□□ -0.2
CCDC78-215	ENST00000538176	PPBP	P02775	128 aa		13.78	□□□□□ -0.2
CCDC78-215	ENST00000538176	PNRC1	Q12796	327 aa	Predicted RBP	13.78	□□□□□ -0.2
CCDC78-215	ENST00000538176	GVQW2	A0A096LPI5	108 aa	Predicted RBP	13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	SLPI	P03973	132 aa		13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	FOXI1	Q12951	378 aa		13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	CIRBP	Q14011	172 aa	Known RBP	13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	FLG2	Q5D862	2391 aa	Predicted RBP	13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	ATP5L2	Q7Z4Y8	100 aa		13.77	□□□□□ -0.21
CCDC78-215	ENST00000538176	PHOX2A	O14813	284 aa		13.76	□□□□□ -0.21
CCDC78-215	ENST00000538176	CD164L2	Q6UWJ8	174 aa		13.76	□□□□□ -0.21
CCDC78-215	ENST00000538176	DPH3	Q96FX2	82 aa		13.76	□□□□□ -0.21
CCDC78-215	ENST00000538176	PKIG	Q9Y2B9	76 aa		13.76	□□□□□ -0.21
CCDC78-215	ENST00000538176	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	13.76	□□□□□ -0.21
CCDC78-215	ENST00000538176	DMBT1	Q9UGM3	2413 aa	Predicted RBP	13.75	□□□□□ -0.21
CCDC78-215	ENST00000538176	C1orf196	B1AJZ1	125 aa		13.75	□□□□□ -0.21
CCDC78-215	ENST00000538176	XCL1	P47992	114 aa		13.75	□□□□□ -0.21
CCDC78-215	ENST00000538176	TIMM21	Q9BVV7	248 aa		13.75	□□□□□ -0.21
CCDC78-215	ENST00000538176	IGHV1-58	A0A0C4DH39	117 aa		13.74	□□□□□ -0.21
CCDC78-215	ENST00000538176		A0A1B0GXF2	115 aa		13.74	□□□□□ -0.21
CCDC78-215	ENST00000538176	TNFRSF6B	O95407	300 aa		13.74	□□□□□ -0.21
CCDC78-215	ENST00000538176	MRPL54	Q6P161	138 aa	Known RBP	13.74	□□□□□ -0.21
CCDC78-215	ENST00000538176	UBE2D4	Q9Y2X8	147 aa		13.74	□□□□□ -0.21
CCDC78-215	ENST00000538176	ANAPC16	Q96DE5	110 aa		13.73	□□□□□ -0.21
CCDC78-215	ENST00000538176	MT-ND4L	P03901	98 aa		13.72	□□□□□ -0.21
CCDC78-215	ENST00000538176	HIGD2B	Q4VC39	106 aa		13.72	□□□□□ -0.21
CCDC78-215	ENST00000538176	KRTAP29-1	A8MX34	341 aa	Predicted RBP	13.71	□□□□□ -0.21
CCDC78-215	ENST00000538176		D6R8Y8	96 aa		13.71	□□□□□ -0.21
CCDC78-215	ENST00000538176		J3QL48	77 aa		13.71	□□□□□ -0.21
CCDC78-215	ENST00000538176	KRTAP10-4	P60372	401 aa	Predicted RBP	13.71	□□□□□ -0.21
CCDC78-215	ENST00000538176	RPL37A	P61513	92 aa	Known RBP	13.71	□□□□□ -0.21
CCDC78-215	ENST00000538176	ORMDL3	Q8N138	153 aa		13.7	□□□□□ -0.22
CCDC78-215	ENST00000538176	SMIM2	Q9BVW6	85 aa		13.7	□□□□□ -0.22
CCDC78-215	ENST00000538176	ZNF561-AS1	K7EIQ3	104 aa		13.69	□□□□□ -0.22
CCDC78-215	ENST00000538176	SPACA4	Q8TDM5	124 aa		13.69	□□□□□ -0.22
CCDC78-215	ENST00000538176	PANO1	I0J062	215 aa		13.68	□□□□□ -0.22
CCDC78-215	ENST00000538176	COX6A2	Q02221	97 aa		13.68	□□□□□ -0.22
CCDC78-215	ENST00000538176	TMEM136	Q6ZRR5	245 aa		13.68	□□□□□ -0.22
CCDC78-215	ENST00000538176	LINC00474	Q9P2X8	69 aa		13.68	□□□□□ -0.22
CCDC78-215	ENST00000538176		A0A087WYN8	130 aa		13.67	□□□□□ -0.22
CCDC78-215	ENST00000538176	MAL	P21145	153 aa		13.67	□□□□□ -0.22
CCDC78-215	ENST00000538176	CLLU1	Q5K131	121 aa		13.67	□□□□□ -0.22
CCDC78-215	ENST00000538176	LAMTOR2	Q9Y2Q5	125 aa		13.67	□□□□□ -0.22
CCDC78-215	ENST00000538176	MYCBP2	O75592	4640 aa		13.67	□□□□□ -0.22
CCDC78-215	ENST00000538176	COX7A2L	O14548	114 aa		13.66	□□□□□ -0.22
CCDC78-215	ENST00000538176	RAB5A	P20339	215 aa		13.66	□□□□□ -0.22
CCDC78-215	ENST00000538176	SPANXA1	Q9NS26	97 aa		13.66	□□□□□ -0.22
CCDC78-215	ENST00000538176	OXT	P01178	125 aa		13.65	□□□□□ -0.22
CCDC78-215	ENST00000538176	NPY	P01303	97 aa		13.65	□□□□□ -0.22
CCDC78-215	ENST00000538176	PLAC8	Q9NZF1	115 aa		13.65	□□□□□ -0.22
CCDC78-215	ENST00000538176	TRAV13-1	A0A0B4J241	112 aa		13.64	□□□□□ -0.23
CCDC78-215	ENST00000538176	PRSS47	A8MTI9	375 aa		13.64	□□□□□ -0.23
CCDC78-215	ENST00000538176	APOM	O95445	188 aa		13.64	□□□□□ -0.23
CCDC78-215	ENST00000538176	PRSS3P2	Q8NHM4	247 aa		13.64	□□□□□ -0.23
CCDC78-215	ENST00000538176	PRELID3A	Q96N28	172 aa		13.64	□□□□□ -0.23
CCDC78-215	ENST00000538176	CHTF8	P0CG12	524 aa		13.63	□□□□□ -0.23
CCDC78-215	ENST00000538176	MRPS36	P82909	103 aa	Known RBP	13.63	□□□□□ -0.23
CCDC78-215	ENST00000538176	SYCN	Q0VAF6	134 aa		13.63	□□□□□ -0.23
CCDC78-215	ENST00000538176	CARD19	Q96LW7	228 aa		13.63	□□□□□ -0.23
CCDC78-215	ENST00000538176	UQCC3	Q6UW78	93 aa		13.62	□□□□□ -0.23
CCDC78-215	ENST00000538176	C7orf33	Q8WU49	177 aa		13.62	□□□□□ -0.23
CCDC78-215	ENST00000538176	MAJIN	Q3KP22	176 aa		13.61	□□□□□ -0.23
CCDC78-215	ENST00000538176		Q6ZUT4	128 aa		13.61	□□□□□ -0.23
CCDC78-215	ENST00000538176	IMMP2L	Q96T52	175 aa		13.61	□□□□□ -0.23
CCDC78-215	ENST00000538176	RPL39	P62891	51 aa	Known RBP	13.6	□□□□□ -0.23
CCDC78-215	ENST00000538176	RNASE13	Q5GAN3	156 aa	Known RBP	13.6	□□□□□ -0.23
CCDC78-215	ENST00000538176	IGKV2-24	A0A0C4DH68	120 aa		13.59	□□□□□ -0.23
CCDC78-215	ENST00000538176	IFI27	P40305	119 aa	Predicted RBP	13.59	□□□□□ -0.23
CCDC78-215	ENST00000538176	C2orf48	Q96LS8	159 aa		13.59	□□□□□ -0.23
CCDC78-215	ENST00000538176	MAP1LC3A	Q9H492	121 aa		13.59	□□□□□ -0.23
CCDC78-215	ENST00000538176	PYGO1	Q9Y3Y4	419 aa		13.59	□□□□□ -0.23
CCDC78-215	ENST00000538176	HERC1	Q15751	4861 aa		13.58	□□□□□ -0.24
CCDC78-215	ENST00000538176	IGLV4-69	A0A075B6H9	119 aa		13.58	□□□□□ -0.24
CCDC78-215	ENST00000538176		K7EMI3	77 aa		13.58	□□□□□ -0.24
CCDC78-215	ENST00000538176		F8WDY8	70 aa		13.57	□□□□□ -0.24
CCDC78-215	ENST00000538176	STPG4	Q8N801	248 aa		13.57	□□□□□ -0.24
CCDC78-215	ENST00000538176	LINC00526	Q96FQ7	95 aa		13.57	□□□□□ -0.24
CCDC78-215	ENST00000538176	CTDSP1	Q9GZU7	261 aa		13.57	□□□□□ -0.24
CCDC78-215	ENST00000538176	C5orf38	Q86SI9	138 aa		13.56	□□□□□ -0.24
CCDC78-215	ENST00000538176	OR10D4P	Q8NGN7	298 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms