RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CST9LQ9H4G1 147 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 MRPL35Q9NZE8 188 aaKnown RBP14.77□□□□□ -0.05
VPS28-212ENST00000530836 ICOSQ9Y6W8 199 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 MRPS36P82909 103 aaKnown RBP14.76□□□□□ -0.05
VPS28-212ENST00000530836 DGAT2L7PQ6IED9 249 aa14.76□□□□□ -0.05
VPS28-212ENST00000530836 Q6ZTC4 211 aa14.76□□□□□ -0.05
VPS28-212ENST00000530836 MUC7Q8TAX7 377 aa14.76□□□□□ -0.05
VPS28-212ENST00000530836 DNAH7Q8WXX0 4024 aa14.76□□□□□ -0.05
VPS28-212ENST00000530836 SPATA45Q537H7 98 aa14.75□□□□□ -0.05
VPS28-212ENST00000530836 FGF6P10767 208 aa14.74□□□□□ -0.05
VPS28-212ENST00000530836 ZNF25P17030 456 aaPredicted RBP14.74□□□□□ -0.05
VPS28-212ENST00000530836 AMELXQ99217 191 aa14.74□□□□□ -0.05
VPS28-212ENST00000530836 NANOS2P60321 138 aaKnown RBP14.72□□□□□ -0.05
VPS28-212ENST00000530836 AMMECR1LQ6DCA0 310 aa14.72□□□□□ -0.05
VPS28-212ENST00000530836 TMEM101Q96IK0 257 aa14.72□□□□□ -0.05
VPS28-212ENST00000530836 OPRPNQ99935 248 aaPredicted RBP14.71□□□□□ -0.05
VPS28-212ENST00000530836 hDV102S1A0JD36 115 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 C3orf84H3BNL1 204 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 MAJINQ3KP22 176 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 C2orf88Q9BSF0 95 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 DEFB131BA0A096LNP1 70 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 CEMP1Q6PRD7 247 aaPredicted RBP14.7□□□□□ -0.06
VPS28-212ENST00000530836 OR5A1Q8NGJ0 315 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 CHCHD5Q9BSY4 110 aa14.7□□□□□ -0.06
VPS28-212ENST00000530836 A0A096LPF7 62 aa14.69□□□□□ -0.06
VPS28-212ENST00000530836 FAM104AQ969W3 186 aa14.69□□□□□ -0.06
VPS28-212ENST00000530836 PRO1933Q9H354 126 aa14.69□□□□□ -0.06
VPS28-212ENST00000530836 TRAV10A0A0B4J240 114 aa14.68□□□□□ -0.06
VPS28-212ENST00000530836 PCP4L1A6NKN8 68 aa14.67□□□□□ -0.06
VPS28-212ENST00000530836 TIRAPP58753 221 aa14.67□□□□□ -0.06
VPS28-212ENST00000530836 Q6ZUT4 128 aa14.67□□□□□ -0.06
VPS28-212ENST00000530836 IGLV4-69A0A075B6H9 119 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 ZFAND6Q6FIF0 208 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 NFE4Q86UQ8 179 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 CDC42SE2Q9NRR3 84 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 IGLC3P0DOY3 106 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 ZC2HC1BQ5TFG8 222 aa14.66□□□□□ -0.06
VPS28-212ENST00000530836 GAGE6Q13070 117 aa14.65□□□□□ -0.06
VPS28-212ENST00000530836 CASC10Q5T4H9 136 aa14.65□□□□□ -0.06
VPS28-212ENST00000530836 LELP1Q5T871 98 aa14.65□□□□□ -0.06
VPS28-212ENST00000530836 STPG4Q8N801 248 aa14.65□□□□□ -0.06
VPS28-212ENST00000530836 A0A1B0GUV1 79 aa14.64□□□□□ -0.07
VPS28-212ENST00000530836 UQCR10Q9UDW1 63 aa14.64□□□□□ -0.07
VPS28-212ENST00000530836 CSMD3Q7Z407 3707 aa14.63□□□□□ -0.07
VPS28-212ENST00000530836 MIEN1Q9BRT3 115 aa14.63□□□□□ -0.07
VPS28-212ENST00000530836 C11orf86A6NJI1 115 aa14.63□□□□□ -0.07
VPS28-212ENST00000530836 SEC11AP67812 179 aa14.63□□□□□ -0.07
VPS28-212ENST00000530836 TINCRA0A1B0GVN0 87 aa14.62□□□□□ -0.07
VPS28-212ENST00000530836 CHAC1Q9BUX1 264 aa14.62□□□□□ -0.07
VPS28-212ENST00000530836 DDTP30046 118 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 UBE2D1P51668 147 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 HERVK_113P61574 105 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 ANKRD39Q53RE8 183 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 RNASE13Q5GAN3 156 aaKnown RBP14.61□□□□□ -0.07
VPS28-212ENST00000530836 FAM19A3Q7Z5A8 133 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 C15orf53Q8NAA6 179 aa14.61□□□□□ -0.07
VPS28-212ENST00000530836 NUPR2A6NF83 97 aa14.6□□□□□ -0.07
VPS28-212ENST00000530836 TMEM262E9PQX1 116 aa14.6□□□□□ -0.07
VPS28-212ENST00000530836 LYPD5Q6UWN5 251 aa14.6□□□□□ -0.07
VPS28-212ENST00000530836 A0A0J9YXV3 536 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 COX8AP10176 69 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 C14orf144Q96I85 54 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 TMEM170BQ5T4T1 132 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 SLC25A34Q6PIV7 304 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 STARD9Q9P2P6 4700 aa14.59□□□□□ -0.07
VPS28-212ENST00000530836 TRAV8-6A0A0B4J262 113 aa14.58□□□□□ -0.08
VPS28-212ENST00000530836 E9PLD3 99 aa14.57□□□□□ -0.08
VPS28-212ENST00000530836 RBX1P62877 108 aa14.57□□□□□ -0.08
VPS28-212ENST00000530836 HERVK_113P63121 156 aa14.57□□□□□ -0.08
VPS28-212ENST00000530836 GEMIN7Q9H840 131 aaKnown RBP14.57□□□□□ -0.08
VPS28-212ENST00000530836 KLK5Q9Y337 293 aaPredicted RBP14.57□□□□□ -0.08
VPS28-212ENST00000530836 IGLV4-60A0A075B6I1 120 aa14.56□□□□□ -0.08
VPS28-212ENST00000530836 NMUP48645 174 aa14.56□□□□□ -0.08
VPS28-212ENST00000530836 DLEU1O43261 78 aa14.55□□□□□ -0.08
VPS28-212ENST00000530836 ZNF22P17026 224 aaPredicted RBP14.55□□□□□ -0.08
VPS28-212ENST00000530836 MPV17L2Q567V2 206 aa14.55□□□□□ -0.08
VPS28-212ENST00000530836 DYNC2H1Q8NCM8 4307 aaKnown RBP14.54□□□□□ -0.08
VPS28-212ENST00000530836 TENM2Q9NT68 2774 aa14.54□□□□□ -0.08
VPS28-212ENST00000530836 IGLV5-45A0A087WSX0 123 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 TRAV13-1A0A0B4J241 112 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 TMEM223A0PJW6 202 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 H3BRM9 83 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 CCL25O15444 150 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 LINC00242Q5T6M2 205 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 BOD1L2Q8IYS8 172 aa14.53□□□□□ -0.08
VPS28-212ENST00000530836 IGKV2D-26A0A0A0MRZ7 120 aa14.52□□□□□ -0.09
VPS28-212ENST00000530836 LINC00469Q8N7U9 141 aa14.52□□□□□ -0.09
VPS28-212ENST00000530836 IGLL5B9A064 214 aa14.51□□□□□ -0.09
VPS28-212ENST00000530836 HNRNPA3P51991 378 aaKnown RBP14.51□□□□□ -0.09
VPS28-212ENST00000530836 TCTAP57738 103 aa14.51□□□□□ -0.09
VPS28-212ENST00000530836 SIVA1O15304 175 aa14.49□□□□□ -0.09
VPS28-212ENST00000530836 ESRGQ1W209 222 aa14.49□□□□□ -0.09
VPS28-212ENST00000530836 MRPS16Q9Y3D3 137 aaKnown RBP14.49□□□□□ -0.09
VPS28-212ENST00000530836 PLECQ15149 4684 aaKnown RBP14.49□□□□□ -0.09
VPS28-212ENST00000530836 PCP2Q8IVA1 136 aa14.48□□□□□ -0.09
VPS28-212ENST00000530836 LINC00587B1AMM8 73 aa14.48□□□□□ -0.09
VPS28-212ENST00000530836 LEPROTO15243 131 aa14.48□□□□□ -0.09
VPS28-212ENST00000530836 ANGP03950 147 aaKnown RBP14.48□□□□□ -0.09
VPS28-212ENST00000530836 SS18Q15532 418 aa14.48□□□□□ -0.09
VPS28-212ENST00000530836 PLEKHB2Q96CS7 222 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms