RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 C9orf66Q5T8R8 295 aa8.44□□□□□ -1.06
USF1-208ENST00000528768 AMMECR1LQ6DCA0 310 aa8.44□□□□□ -1.06
USF1-208ENST00000528768 DGAT2L7PQ6IED9 249 aa8.44□□□□□ -1.06
USF1-208ENST00000528768 DAZ4Q86SG3 579 aaKnown RBP8.44□□□□□ -1.06
USF1-208ENST00000528768 TIMM21Q9BVV7 248 aa8.44□□□□□ -1.06
USF1-208ENST00000528768 TTTY13Q9BZ97 58 aa8.44□□□□□ -1.06
USF1-208ENST00000528768 DAZ3Q9NR90 486 aaKnown RBP8.44□□□□□ -1.06
USF1-208ENST00000528768 TRBV7-3A0A075B6L6 115 aa8.43□□□□□ -1.06
USF1-208ENST00000528768 K7EQD1 137 aa8.43□□□□□ -1.06
USF1-208ENST00000528768 FABP2P12104 132 aa8.43□□□□□ -1.06
USF1-208ENST00000528768 SRSF9Q13242 221 aaKnown RBP eCLIP8.43□□□□□ -1.06
USF1-208ENST00000528768 Q6ZVH6 145 aa8.43□□□□□ -1.06
USF1-208ENST00000528768 DEFB104AQ8WTQ1 72 aa8.43□□□□□ -1.06
USF1-208ENST00000528768 H3BUT2 72 aa8.42□□□□□ -1.06
USF1-208ENST00000528768 CCL25O15444 150 aa8.42□□□□□ -1.06
USF1-208ENST00000528768 PRM2P04554 102 aa8.42□□□□□ -1.06
USF1-208ENST00000528768 AMELXQ99217 191 aa8.42□□□□□ -1.06
USF1-208ENST00000528768 TRGV2A0A075B6R0 118 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 TMEM223A0PJW6 202 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 J3QQQ9 107 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 FXYD2P54710 66 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 EMP1P54849 157 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 MRPS36P82909 103 aaKnown RBP8.41□□□□□ -1.06
USF1-208ENST00000528768 Q6ZSN1 163 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 OR5A1Q8NGJ0 315 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 ZNRF2Q8NHG8 242 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 RAB37Q96AX2 223 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 OVOL2Q9BRP0 275 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 CHCHD7Q9BUK0 85 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 NOP10Q9NPE3 64 aaKnown RBP8.41□□□□□ -1.06
USF1-208ENST00000528768 C19orf73Q9NVV2 129 aa8.41□□□□□ -1.06
USF1-208ENST00000528768 NHP2Q9NX24 153 aaKnown RBP8.41□□□□□ -1.06
USF1-208ENST00000528768 SORL1Q92673 2214 aa8.4□□□□□ -1.06
USF1-208ENST00000528768 TINCRA0A1B0GVN0 87 aa8.4□□□□□ -1.06
USF1-208ENST00000528768 A0A1W2PPM0 123 aa8.4□□□□□ -1.06
USF1-208ENST00000528768 ZNF22P17026 224 aaPredicted RBP8.4□□□□□ -1.06
USF1-208ENST00000528768 Q6ZTI0 123 aa8.4□□□□□ -1.06
USF1-208ENST00000528768 PHLDA1Q8WV24 401 aaPredicted RBP8.4□□□□□ -1.06
USF1-208ENST00000528768 GEMIN7Q9H840 131 aaKnown RBP8.4□□□□□ -1.06
USF1-208ENST00000528768 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
USF1-208ENST00000528768 UBE2D4Q9Y2X8 147 aa8.4□□□□□ -1.06
USF1-208ENST00000528768 A0A0J9YXV3 536 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 TRBV6-4A0A1B0GX49 114 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 SMIM9A6NGZ8 99 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 K7EP34 96 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 C12orf74Q32Q52 190 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 ZNF479Q96JC4 524 aa8.39□□□□□ -1.07
USF1-208ENST00000528768 OPRPNQ99935 248 aaPredicted RBP8.39□□□□□ -1.07
USF1-208ENST00000528768 TRGV4A0A0C4DH28 118 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 GAGE12BA1L429 117 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 H7C423 109 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 GAGE7O76087 117 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 GIG44P09565 113 aaPredicted RBP8.38□□□□□ -1.07
USF1-208ENST00000528768 GAGE12FP0CL80 117 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 GAGE12GP0CL81 117 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 GAGE12IP0CL82 117 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 ZFAND6Q6FIF0 208 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 CSNK1G2-AS1Q8NCQ2 148 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 TMEM101Q96IK0 257 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 SPCS1Q9Y6A9 102 aa8.38□□□□□ -1.07
USF1-208ENST00000528768 CSMD3Q7Z407 3707 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.37□□□□□ -1.07
USF1-208ENST00000528768 IGHV3-38A0A0C4DH36 116 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 A0A0J9YY99 117 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 IGKV2-29A2NJV5 120 aaPredicted RBP8.37□□□□□ -1.07
USF1-208ENST00000528768 TMEM238C9JI98 176 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 UBE2L6O14933 153 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 TIRAPP58753 221 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 UBE2D3P61077 147 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 UBE2D2P62837 147 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 LYRM7Q5U5X0 104 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 SBSPONQ8IVN8 264 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 SLC25A29Q8N8R3 303 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 GTSF1LQ9H1H1 148 aa8.37□□□□□ -1.07
USF1-208ENST00000528768 CSDC2Q9Y534 153 aaKnown RBP8.37□□□□□ -1.07
USF1-208ENST00000528768 A0A1B0GWB2 263 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 GAGE12JA6NER3 117 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 K7EP13 123 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 HERVK_113P63121 156 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 GAGE4Q13068 117 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 GAGE5Q13069 117 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 GAGE13Q4V321 117 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 WFDC10AQ9H1F0 79 aa8.36□□□□□ -1.07
USF1-208ENST00000528768 IGHV1-58A0A0C4DH39 117 aa8.35□□□□□ -1.07
USF1-208ENST00000528768 IGLL5B9A064 214 aa8.35□□□□□ -1.07
USF1-208ENST00000528768 APOC4P55056 127 aa8.35□□□□□ -1.07
USF1-208ENST00000528768 KIR2DL5BQ8NHK3 375 aa8.35□□□□□ -1.07
USF1-208ENST00000528768 TMEM243Q9BU79 118 aa8.35□□□□□ -1.07
USF1-208ENST00000528768 HUWE1Q7Z6Z7 4374 aaKnown RBP8.35□□□□□ -1.07
USF1-208ENST00000528768 RPL24P83731 157 aaKnown RBP8.34□□□□□ -1.07
USF1-208ENST00000528768 Q6ZUT4 128 aa8.34□□□□□ -1.07
USF1-208ENST00000528768 HYDINQ4G0P3 5121 aa8.34□□□□□ -1.07
USF1-208ENST00000528768 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.33□□□□□ -1.08
USF1-208ENST00000528768 PLAC8L1A1L4L8 177 aa8.33□□□□□ -1.08
USF1-208ENST00000528768 K7ERJ3 54 aa8.33□□□□□ -1.08
USF1-208ENST00000528768 IGHV3-30-3P0DP02 117 aa8.33□□□□□ -1.08
USF1-208ENST00000528768 UBE2D1P51668 147 aa8.33□□□□□ -1.08
USF1-208ENST00000528768 CEMP1Q6PRD7 247 aaPredicted RBP8.33□□□□□ -1.08
USF1-208ENST00000528768 STARD9Q9P2P6 4700 aa8.32□□□□□ -1.08
USF1-208ENST00000528768 TSPEAR-AS2P59090 65 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms