RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FAT1Q14517 4588 aa13.35□□□□□ -0.27
VPS28-206ENST00000526734 IGKV3OR2-268A0A0C4DH90 116 aa13.34□□□□□ -0.27
VPS28-206ENST00000526734 SMKR1H3BMG3 65 aa13.34□□□□□ -0.27
VPS28-206ENST00000526734 RPL32P62910 135 aaKnown RBP13.34□□□□□ -0.27
VPS28-206ENST00000526734 MRPL51Q4U2R6 128 aaKnown RBP13.34□□□□□ -0.27
VPS28-206ENST00000526734 ATP5L2Q7Z4Y8 100 aa13.34□□□□□ -0.27
VPS28-206ENST00000526734 LINC00528Q8N1L1 170 aa13.34□□□□□ -0.27
VPS28-206ENST00000526734 CHCHD10Q8WYQ3 142 aaPredicted RBP13.34□□□□□ -0.27
VPS28-206ENST00000526734 A0A1B0GXF2 115 aa13.33□□□□□ -0.28
VPS28-206ENST00000526734 TRBV24-1A0A075B6N3 115 aa13.32□□□□□ -0.28
VPS28-206ENST00000526734 CKS2P33552 79 aa13.32□□□□□ -0.28
VPS28-206ENST00000526734 CIRBP-AS1Q8TBR5 109 aa13.32□□□□□ -0.28
VPS28-206ENST00000526734 PPBPP02775 128 aa13.31□□□□□ -0.28
VPS28-206ENST00000526734 CLLU1Q5K131 121 aa13.31□□□□□ -0.28
VPS28-206ENST00000526734 MRPL54Q6P161 138 aaKnown RBP13.31□□□□□ -0.28
VPS28-206ENST00000526734 TMEM18Q96B42 140 aa13.31□□□□□ -0.28
VPS28-206ENST00000526734 CSDC2Q9Y534 153 aaKnown RBP13.31□□□□□ -0.28
VPS28-206ENST00000526734 PHOX2AO14813 284 aa13.3□□□□□ -0.28
VPS28-206ENST00000526734 C15orf56Q8N910 161 aa13.3□□□□□ -0.28
VPS28-206ENST00000526734 CDC42SE2Q9NRR3 84 aa13.3□□□□□ -0.28
VPS28-206ENST00000526734 IGHV3-64A0A075B6Q5 118 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 LINC00959A0A1B0GUT2 108 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 MT-ND4LP03901 98 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 SS18Q15532 418 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 SDIM1Q6ZPB5 146 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 ZNF664Q8N3J9 261 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 ANAPC16Q96DE5 110 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 VPS13BQ7Z7G8 4022 aa13.29□□□□□ -0.28
VPS28-206ENST00000526734 CCL25O15444 150 aa13.28□□□□□ -0.28
VPS28-206ENST00000526734 TIMM21Q9BVV7 248 aa13.28□□□□□ -0.28
VPS28-206ENST00000526734 GVQW2A0A096LPI5 108 aaPredicted RBP13.27□□□□□ -0.29
VPS28-206ENST00000526734 TNFRSF6BO95407 300 aa13.27□□□□□ -0.29
VPS28-206ENST00000526734 FOXI1Q12951 378 aa13.27□□□□□ -0.29
VPS28-206ENST00000526734 SMIM2Q9BVW6 85 aa13.27□□□□□ -0.29
VPS28-206ENST00000526734 D6R8Y8 96 aa13.26□□□□□ -0.29
VPS28-206ENST00000526734 UBE2D4Q9Y2X8 147 aa13.26□□□□□ -0.29
VPS28-206ENST00000526734 XCL1P47992 114 aa13.25□□□□□ -0.29
VPS28-206ENST00000526734 CD164L2Q6UWJ8 174 aa13.25□□□□□ -0.29
VPS28-206ENST00000526734 ORMDL3Q8N138 153 aa13.25□□□□□ -0.29
VPS28-206ENST00000526734 IGHV1-58A0A0C4DH39 117 aa13.24□□□□□ -0.29
VPS28-206ENST00000526734 CIRBPQ14011 172 aaKnown RBP13.24□□□□□ -0.29
VPS28-206ENST00000526734 UQCC3Q6UW78 93 aa13.24□□□□□ -0.29
VPS28-206ENST00000526734 PKIGQ9Y2B9 76 aa13.24□□□□□ -0.29
VPS28-206ENST00000526734 SRRM2Q9UQ35 2752 aaKnown RBP13.24□□□□□ -0.29
VPS28-206ENST00000526734 C1orf196B1AJZ1 125 aa13.23□□□□□ -0.29
VPS28-206ENST00000526734 SLPIP03973 132 aa13.23□□□□□ -0.29
VPS28-206ENST00000526734 NPYP01303 97 aa13.22□□□□□ -0.29
VPS28-206ENST00000526734 HIGD2BQ4VC39 106 aa13.22□□□□□ -0.29
VPS28-206ENST00000526734 LAMTOR2Q9Y2Q5 125 aa13.22□□□□□ -0.29
VPS28-206ENST00000526734 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.22□□□□□ -0.29
VPS28-206ENST00000526734 TMEM136Q6ZRR5 245 aa13.21□□□□□ -0.29
VPS28-206ENST00000526734 SPANXA1Q9NS26 97 aa13.21□□□□□ -0.29
VPS28-206ENST00000526734 PRELID3AQ96N28 172 aa13.2□□□□□ -0.3
VPS28-206ENST00000526734 RAB5AP20339 215 aa13.18□□□□□ -0.3
VPS28-206ENST00000526734 Q6ZUT4 128 aa13.18□□□□□ -0.3
VPS28-206ENST00000526734 IMMP2LQ96T52 175 aa13.18□□□□□ -0.3
VPS28-206ENST00000526734 PRSS47A8MTI9 375 aa13.17□□□□□ -0.3
VPS28-206ENST00000526734 COX7A2LO14548 114 aa13.17□□□□□ -0.3
VPS28-206ENST00000526734 SPACA4Q8TDM5 124 aa13.17□□□□□ -0.3
VPS28-206ENST00000526734 DMBT1Q9UGM3 2413 aaPredicted RBP13.16□□□□□ -0.3
VPS28-206ENST00000526734 PANO1I0J062 215 aa13.16□□□□□ -0.3
VPS28-206ENST00000526734 ZNF561-AS1K7EIQ3 104 aa13.16□□□□□ -0.3
VPS28-206ENST00000526734 MALP21145 153 aa13.16□□□□□ -0.3
VPS28-206ENST00000526734 KRTAP10-4P60372 401 aaPredicted RBP13.16□□□□□ -0.3
VPS28-206ENST00000526734 RPL37AP61513 92 aaKnown RBP13.16□□□□□ -0.3
VPS28-206ENST00000526734 MRPS36P82909 103 aaKnown RBP13.16□□□□□ -0.3
VPS28-206ENST00000526734 FLG2Q5D862 2391 aaPredicted RBP13.16□□□□□ -0.3
VPS28-206ENST00000526734 TRAV13-1A0A0B4J241 112 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 TMEM218A2RU14 115 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 IFITM2Q01629 132 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 DPH3Q96FX2 82 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 CTDSP1Q9GZU7 261 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 MAP1LC3AQ9H492 121 aa13.15□□□□□ -0.3
VPS28-206ENST00000526734 RPL39P62891 51 aaKnown RBP13.14□□□□□ -0.31
VPS28-206ENST00000526734 CARD19Q96LW7 228 aa13.14□□□□□ -0.31
VPS28-206ENST00000526734 TRAV9-1A0A075B6T8 112 aa13.13□□□□□ -0.31
VPS28-206ENST00000526734 APOMO95445 188 aa13.13□□□□□ -0.31
VPS28-206ENST00000526734 COX6A2Q02221 97 aa13.13□□□□□ -0.31
VPS28-206ENST00000526734 RNASE13Q5GAN3 156 aaKnown RBP13.13□□□□□ -0.31
VPS28-206ENST00000526734 LINC00474Q9P2X8 69 aa13.13□□□□□ -0.31
VPS28-206ENST00000526734 A0A087WYN8 130 aa13.12□□□□□ -0.31
VPS28-206ENST00000526734 IFI27P40305 119 aaPredicted RBP13.12□□□□□ -0.31
VPS28-206ENST00000526734 PLAC8Q9NZF1 115 aa13.12□□□□□ -0.31
VPS28-206ENST00000526734 PYGO1Q9Y3Y4 419 aa13.12□□□□□ -0.31
VPS28-206ENST00000526734 K7EMI3 77 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 CHTF8P0CG12 524 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 ADCYAP1P18509 176 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 SYCNQ0VAF6 134 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 PRSS3P2Q8NHM4 247 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 SEC11CQ9BY50 192 aa13.11□□□□□ -0.31
VPS28-206ENST00000526734 MYCBP2O75592 4640 aa13.1□□□□□ -0.31
VPS28-206ENST00000526734 Q8N8P6 123 aa13.1□□□□□ -0.31
VPS28-206ENST00000526734 IFITM10A6NMD0 228 aa13.09□□□□□ -0.31
VPS28-206ENST00000526734 KRTAP29-1A8MX34 341 aaPredicted RBP13.09□□□□□ -0.31
VPS28-206ENST00000526734 C2orf48Q96LS8 159 aa13.09□□□□□ -0.31
VPS28-206ENST00000526734 J3QL48 77 aa13.08□□□□□ -0.32
VPS28-206ENST00000526734 OR10D4PQ8NGN7 298 aa13.08□□□□□ -0.32
VPS28-206ENST00000526734 FAM104AQ969W3 186 aa13.08□□□□□ -0.32
VPS28-206ENST00000526734 IGLV4-69A0A075B6H9 119 aa13.07□□□□□ -0.32
VPS28-206ENST00000526734 IGKV2-24A0A0C4DH68 120 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms