RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ESDP10768 282 aa8.74□□□□□ -1.01
TCOF1-215ENST00000515516 XCL1P47992 114 aa8.74□□□□□ -1.01
TCOF1-215ENST00000515516 POLR2KP53803 58 aaKnown RBP8.74□□□□□ -1.01
TCOF1-215ENST00000515516 RPL23P62829 140 aaKnown RBP8.74□□□□□ -1.01
TCOF1-215ENST00000515516 SS18Q15532 418 aa8.74□□□□□ -1.01
TCOF1-215ENST00000515516 LINC00959A0A1B0GUT2 108 aa8.73□□□□□ -1.01
TCOF1-215ENST00000515516 C7orf77A4D0Y5 90 aa8.73□□□□□ -1.01
TCOF1-215ENST00000515516 FOXI1Q12951 378 aa8.73□□□□□ -1.01
TCOF1-215ENST00000515516 CIRBPQ14011 172 aaKnown RBP8.73□□□□□ -1.01
TCOF1-215ENST00000515516 KIR2DL4Q99706 377 aa8.73□□□□□ -1.01
TCOF1-215ENST00000515516 SMKR1H3BMG3 65 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 PPP1R2P9O14990 202 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 CCL25O15444 150 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 MRPL52Q86TS9 123 aaKnown RBP8.72□□□□□ -1.01
TCOF1-215ENST00000515516 ZNF664Q8N3J9 261 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 SMDT1Q9H4I9 107 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 CDC42SE2Q9NRR3 84 aa8.72□□□□□ -1.01
TCOF1-215ENST00000515516 A0A087WYN8 130 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 GVQW2A0A096LPI5 108 aaPredicted RBP8.71□□□□□ -1.02
TCOF1-215ENST00000515516 IGHV1-58A0A0C4DH39 117 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 A0A1B0GW15 77 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 CHTF8P0CG12 524 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 SUMO2P61956 95 aaKnown RBP8.71□□□□□ -1.02
TCOF1-215ENST00000515516 COX6A2Q02221 97 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 SPACA4Q8TDM5 124 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 PKIGQ9Y2B9 76 aa8.71□□□□□ -1.02
TCOF1-215ENST00000515516 SMIM27A0A1W2PRY6 76 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 C9JQL5 133 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 S100A8P05109 93 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 CAMPP49913 170 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 MAJINQ3KP22 176 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 FAM104BQ5XKR9 115 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 C7orf33Q8WU49 177 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 TMEM18Q96B42 140 aa8.7□□□□□ -1.02
TCOF1-215ENST00000515516 IGKV2-24A0A0C4DH68 120 aa8.69□□□□□ -1.02
TCOF1-215ENST00000515516 ZNF561-AS1K7EIQ3 104 aa8.69□□□□□ -1.02
TCOF1-215ENST00000515516 CKS2P33552 79 aa8.69□□□□□ -1.02
TCOF1-215ENST00000515516 MRPL51Q4U2R6 128 aaKnown RBP8.69□□□□□ -1.02
TCOF1-215ENST00000515516 CD164L2Q6UWJ8 174 aa8.69□□□□□ -1.02
TCOF1-215ENST00000515516 NRACQ8N912 160 aa8.69□□□□□ -1.02
TCOF1-215ENST00000515516 LINC00862A6NCI5 91 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 C1orf196B1AJZ1 125 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 F8W036 122 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 TCAPO15273 167 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 MALP21145 153 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 SRSF3P84103 164 aaKnown RBP8.68□□□□□ -1.02
TCOF1-215ENST00000515516 SERTAD4-AS1Q5TG53 156 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 PRSS3P2Q8NHM4 247 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 C20orf78Q9BR46 151 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 PLAC8Q9NZF1 115 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 LINC00474Q9P2X8 69 aa8.68□□□□□ -1.02
TCOF1-215ENST00000515516 CSDC2Q9Y534 153 aaKnown RBP8.68□□□□□ -1.02
TCOF1-215ENST00000515516 CARD19Q96LW7 228 aa8.67□□□□□ -1.02
TCOF1-215ENST00000515516 HNRNPA3P51991 378 aaKnown RBP8.66□□□□□ -1.02
TCOF1-215ENST00000515516 HBBP68871 147 aa8.66□□□□□ -1.02
TCOF1-215ENST00000515516 MRPL54Q6P161 138 aaKnown RBP8.66□□□□□ -1.02
TCOF1-215ENST00000515516 STPG4Q8N801 248 aa8.66□□□□□ -1.02
TCOF1-215ENST00000515516 UBE2D4Q9Y2X8 147 aa8.66□□□□□ -1.02
TCOF1-215ENST00000515516 TRAV13-1A0A0B4J241 112 aa8.65□□□□□ -1.02
TCOF1-215ENST00000515516 COX7A2LO14548 114 aa8.65□□□□□ -1.02
TCOF1-215ENST00000515516 SYCNQ0VAF6 134 aa8.65□□□□□ -1.02
TCOF1-215ENST00000515516 Q6ZRU5 148 aa8.65□□□□□ -1.02
TCOF1-215ENST00000515516 LINC00526Q96FQ7 95 aa8.65□□□□□ -1.02
TCOF1-215ENST00000515516 TRBV24-1A0A075B6N3 115 aa8.64□□□□□ -1.03
TCOF1-215ENST00000515516 PHOX2AO14813 284 aa8.64□□□□□ -1.03
TCOF1-215ENST00000515516 TNFRSF6BO95407 300 aa8.64□□□□□ -1.03
TCOF1-215ENST00000515516 RPL32P62910 135 aaKnown RBP8.64□□□□□ -1.03
TCOF1-215ENST00000515516 RNASE13Q5GAN3 156 aaKnown RBP8.64□□□□□ -1.03
TCOF1-215ENST00000515516 TIMM21Q9BVV7 248 aa8.64□□□□□ -1.03
TCOF1-215ENST00000515516 A0A096LNI7 61 aa8.63□□□□□ -1.03
TCOF1-215ENST00000515516 D6R8Y8 96 aa8.63□□□□□ -1.03
TCOF1-215ENST00000515516 APOMO95445 188 aa8.63□□□□□ -1.03
TCOF1-215ENST00000515516 PPBPP02775 128 aa8.63□□□□□ -1.03
TCOF1-215ENST00000515516 Q6ZUT4 128 aa8.62□□□□□ -1.03
TCOF1-215ENST00000515516 SMIM2Q9BVW6 85 aa8.62□□□□□ -1.03
TCOF1-215ENST00000515516 IGLV4-69A0A075B6H9 119 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 RAB5AP20339 215 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 RAB14P61106 215 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 ATP5L2Q7Z4Y8 100 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 C5orf38Q86SI9 138 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 CAMK2N2Q96S95 79 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 SPANXA1Q9NS26 97 aa8.61□□□□□ -1.03
TCOF1-215ENST00000515516 LOC107984640A0A0U1RRK4 108 aa8.6□□□□□ -1.03
TCOF1-215ENST00000515516 A0A1B0GXF2 115 aa8.6□□□□□ -1.03
TCOF1-215ENST00000515516 RPL39P62891 51 aaKnown RBP8.6□□□□□ -1.03
TCOF1-215ENST00000515516 ORMDL3Q8N138 153 aa8.6□□□□□ -1.03
TCOF1-215ENST00000515516 NPYP01303 97 aa8.59□□□□□ -1.03
TCOF1-215ENST00000515516 GAGE2BQ13066 116 aa8.59□□□□□ -1.03
TCOF1-215ENST00000515516 TMEM136Q6ZRR5 245 aa8.59□□□□□ -1.03
TCOF1-215ENST00000515516 LRP1Q07954 4544 aaKnown RBP8.59□□□□□ -1.04
TCOF1-215ENST00000515516 PKHD1L1Q86WI1 4243 aa8.58□□□□□ -1.04
TCOF1-215ENST00000515516 MT-ND4LP03901 98 aa8.58□□□□□ -1.04
TCOF1-215ENST00000515516 PTTG1IPP53801 180 aa8.58□□□□□ -1.04
TCOF1-215ENST00000515516 PNRC1Q12796 327 aaPredicted RBP8.58□□□□□ -1.04
TCOF1-215ENST00000515516 C2orf48Q96LS8 159 aa8.58□□□□□ -1.04
TCOF1-215ENST00000515516 PRELID3AQ96N28 172 aa8.58□□□□□ -1.04
TCOF1-215ENST00000515516 FAT3Q8TDW7 4589 aa8.57□□□□□ -1.04
TCOF1-215ENST00000515516 IFITM10A6NMD0 228 aa8.57□□□□□ -1.04
TCOF1-215ENST00000515516 PRR3P79522 188 aaKnown RBP8.57□□□□□ -1.04
TCOF1-215ENST00000515516 MRPS36P82909 103 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms