RNA–Protein interactions for RNA: ENST00000509102.5

UBE3D-207, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,246 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-207ENST00000509102 KIR2DL4Q99706 377 aa12.08□□□□□ -0.48
UBE3D-207ENST00000509102 CHCHD10Q8WYQ3 142 aaPredicted RBP12.07□□□□□ -0.48
UBE3D-207ENST00000509102 LINC00862A6NCI5 91 aa12.06□□□□□ -0.48
UBE3D-207ENST00000509102 F8W036 122 aa12.06□□□□□ -0.48
UBE3D-207ENST00000509102 SMKR1H3BMG3 65 aa12.06□□□□□ -0.48
UBE3D-207ENST00000509102 ESDP10768 282 aa12.06□□□□□ -0.48
UBE3D-207ENST00000509102 SUMO2P61956 95 aaKnown RBP12.06□□□□□ -0.48
UBE3D-207ENST00000509102 FAM104BQ5XKR9 115 aa12.06□□□□□ -0.48
UBE3D-207ENST00000509102 IGHV3-64A0A075B6Q5 118 aa12.05□□□□□ -0.48
UBE3D-207ENST00000509102 CKS2P33552 79 aa12.04□□□□□ -0.48
UBE3D-207ENST00000509102 HBBP68871 147 aa12.04□□□□□ -0.48
UBE3D-207ENST00000509102 MRPL51Q4U2R6 128 aaKnown RBP12.04□□□□□ -0.48
UBE3D-207ENST00000509102 MRPL52Q86TS9 123 aaKnown RBP12.04□□□□□ -0.48
UBE3D-207ENST00000509102 VPS13BQ7Z7G8 4022 aa12.03□□□□□ -0.48
UBE3D-207ENST00000509102 TCAPO15273 167 aa12.03□□□□□ -0.48
UBE3D-207ENST00000509102 SS18Q15532 418 aa12.03□□□□□ -0.48
UBE3D-207ENST00000509102 TMEM18Q96B42 140 aa12.03□□□□□ -0.48
UBE3D-207ENST00000509102 XCL1P47992 114 aa12.02□□□□□ -0.49
UBE3D-207ENST00000509102 MRPL54Q6P161 138 aaKnown RBP12.02□□□□□ -0.49
UBE3D-207ENST00000509102 NRACQ8N912 160 aa12.02□□□□□ -0.49
UBE3D-207ENST00000509102 DPH3Q96FX2 82 aa12.02□□□□□ -0.49
UBE3D-207ENST00000509102 C20orf78Q9BR46 151 aa12.02□□□□□ -0.49
UBE3D-207ENST00000509102 LINC00959A0A1B0GUT2 108 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 PNRC1Q12796 327 aaPredicted RBP12.01□□□□□ -0.49
UBE3D-207ENST00000509102 C4orf48Q5BLP8 95 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 SDIM1Q6ZPB5 146 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 ZNF664Q8N3J9 261 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 C15orf56Q8N910 161 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 CDC42SE2Q9NRR3 84 aa12.01□□□□□ -0.49
UBE3D-207ENST00000509102 DMBT1Q9UGM3 2413 aaPredicted RBP12.01□□□□□ -0.49
UBE3D-207ENST00000509102 CCL25O15444 150 aa12□□□□□ -0.49
UBE3D-207ENST00000509102 HIGD2BQ4VC39 106 aa12□□□□□ -0.49
UBE3D-207ENST00000509102 TRBV24-1A0A075B6N3 115 aa11.99□□□□□ -0.49
UBE3D-207ENST00000509102 PPBPP02775 128 aa11.99□□□□□ -0.49
UBE3D-207ENST00000509102 FOXI1Q12951 378 aa11.99□□□□□ -0.49
UBE3D-207ENST00000509102 ATP5L2Q7Z4Y8 100 aa11.99□□□□□ -0.49
UBE3D-207ENST00000509102 CSDC2Q9Y534 153 aaKnown RBP11.99□□□□□ -0.49
UBE3D-207ENST00000509102 FLG2Q5D862 2391 aaPredicted RBP11.98□□□□□ -0.49
UBE3D-207ENST00000509102 GVQW2A0A096LPI5 108 aaPredicted RBP11.98□□□□□ -0.49
UBE3D-207ENST00000509102 RPL32P62910 135 aaKnown RBP11.98□□□□□ -0.49
UBE3D-207ENST00000509102 PKIGQ9Y2B9 76 aa11.98□□□□□ -0.49
UBE3D-207ENST00000509102 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.98□□□□□ -0.49
UBE3D-207ENST00000509102 IGHV1-58A0A0C4DH39 117 aa11.97□□□□□ -0.49
UBE3D-207ENST00000509102 D6R8Y8 96 aa11.97□□□□□ -0.49
UBE3D-207ENST00000509102 TNFRSF6BO95407 300 aa11.97□□□□□ -0.49
UBE3D-207ENST00000509102 MT-ND4LP03901 98 aa11.97□□□□□ -0.49
UBE3D-207ENST00000509102 CD164L2Q6UWJ8 174 aa11.97□□□□□ -0.49
UBE3D-207ENST00000509102 A0A1B0GXF2 115 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 C1orf196B1AJZ1 125 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 PHOX2AO14813 284 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 SLPIP03973 132 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 RPL37AP61513 92 aaKnown RBP11.96□□□□□ -0.49
UBE3D-207ENST00000509102 ANAPC16Q96DE5 110 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 UBE2D4Q9Y2X8 147 aa11.96□□□□□ -0.49
UBE3D-207ENST00000509102 ORMDL3Q8N138 153 aa11.95□□□□□ -0.5
UBE3D-207ENST00000509102 TIMM21Q9BVV7 248 aa11.95□□□□□ -0.5
UBE3D-207ENST00000509102 SMIM2Q9BVW6 85 aa11.95□□□□□ -0.5
UBE3D-207ENST00000509102 ZNF561-AS1K7EIQ3 104 aa11.94□□□□□ -0.5
UBE3D-207ENST00000509102 MALP21145 153 aa11.94□□□□□ -0.5
UBE3D-207ENST00000509102 CIRBPQ14011 172 aaKnown RBP11.94□□□□□ -0.5
UBE3D-207ENST00000509102 LCE2CQ5TA81 110 aa11.94□□□□□ -0.5
UBE3D-207ENST00000509102 MYCBP2O75592 4640 aa11.93□□□□□ -0.5
UBE3D-207ENST00000509102 RAB5AP20339 215 aa11.93□□□□□ -0.5
UBE3D-207ENST00000509102 PANO1I0J062 215 aa11.92□□□□□ -0.5
UBE3D-207ENST00000509102 COX7A2LO14548 114 aa11.92□□□□□ -0.5
UBE3D-207ENST00000509102 COX6A2Q02221 97 aa11.92□□□□□ -0.5
UBE3D-207ENST00000509102 CLLU1Q5K131 121 aa11.92□□□□□ -0.5
UBE3D-207ENST00000509102 TMEM136Q6ZRR5 245 aa11.92□□□□□ -0.5
UBE3D-207ENST00000509102 TRAV13-1A0A0B4J241 112 aa11.91□□□□□ -0.5
UBE3D-207ENST00000509102 NPYP01303 97 aa11.91□□□□□ -0.5
UBE3D-207ENST00000509102 SPACA4Q8TDM5 124 aa11.91□□□□□ -0.5
UBE3D-207ENST00000509102 PRELID3AQ96N28 172 aa11.91□□□□□ -0.5
UBE3D-207ENST00000509102 SPANXA1Q9NS26 97 aa11.91□□□□□ -0.5
UBE3D-207ENST00000509102 CHTF8P0CG12 524 aa11.9□□□□□ -0.5
UBE3D-207ENST00000509102 RNASE13Q5GAN3 156 aaKnown RBP11.9□□□□□ -0.5
UBE3D-207ENST00000509102 Q6ZUT4 128 aa11.9□□□□□ -0.5
UBE3D-207ENST00000509102 CARD19Q96LW7 228 aa11.9□□□□□ -0.5
UBE3D-207ENST00000509102 A0A087WYN8 130 aa11.89□□□□□ -0.51
UBE3D-207ENST00000509102 APOMO95445 188 aa11.89□□□□□ -0.51
UBE3D-207ENST00000509102 LINC00474Q9P2X8 69 aa11.89□□□□□ -0.51
UBE3D-207ENST00000509102 LAMTOR2Q9Y2Q5 125 aa11.89□□□□□ -0.51
UBE3D-207ENST00000509102 IGKV2-24A0A0C4DH68 120 aa11.88□□□□□ -0.51
UBE3D-207ENST00000509102 RPL39P62891 51 aaKnown RBP11.88□□□□□ -0.51
UBE3D-207ENST00000509102 MAJINQ3KP22 176 aa11.88□□□□□ -0.51
UBE3D-207ENST00000509102 KRTAP29-1A8MX34 341 aaPredicted RBP11.87□□□□□ -0.51
UBE3D-207ENST00000509102 KRTAP10-4P60372 401 aaPredicted RBP11.87□□□□□ -0.51
UBE3D-207ENST00000509102 SYCNQ0VAF6 134 aa11.87□□□□□ -0.51
UBE3D-207ENST00000509102 UQCC3Q6UW78 93 aa11.87□□□□□ -0.51
UBE3D-207ENST00000509102 PRSS3P2Q8NHM4 247 aa11.87□□□□□ -0.51
UBE3D-207ENST00000509102 C7orf33Q8WU49 177 aa11.87□□□□□ -0.51
UBE3D-207ENST00000509102 MAP1LC3AQ9H492 121 aa11.87□□□□□ -0.51
UBE3D-207ENST00000509102 HERC1Q15751 4861 aa11.86□□□□□ -0.51
UBE3D-207ENST00000509102 IFI27P40305 119 aaPredicted RBP11.86□□□□□ -0.51
UBE3D-207ENST00000509102 LINC00526Q96FQ7 95 aa11.86□□□□□ -0.51
UBE3D-207ENST00000509102 PLAC8Q9NZF1 115 aa11.86□□□□□ -0.51
UBE3D-207ENST00000509102 MRPS36P82909 103 aaKnown RBP11.85□□□□□ -0.51
UBE3D-207ENST00000509102 IFITM10A6NMD0 228 aa11.84□□□□□ -0.51
UBE3D-207ENST00000509102 C5orf38Q86SI9 138 aa11.84□□□□□ -0.51
UBE3D-207ENST00000509102 IGLV4-69A0A075B6H9 119 aa11.83□□□□□ -0.52
UBE3D-207ENST00000509102 LOC389332A0A1B0GUA5 103 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms