RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 ESDP10768 282 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 PRR3P79522 188 aaKnown RBP7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 BORCS7Q96B45 105 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 LINC00526Q96FQ7 95 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 TMEM101Q96IK0 257 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 ST20Q9HBF5 79 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 UBR4Q5T4S7 5183 aa7.25□□□□□ -1.25
HMGCS1-204ENST00000507293 IGHV1-58A0A0C4DH39 117 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 ZNF727A8MUV8 499 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 FAM74A3Q4VXF1 159 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 CT83Q5H943 113 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 MRAP2Q96G30 205 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 SMIM7Q9BQ49 75 aa7.24□□□□□ -1.25
HMGCS1-204ENST00000507293 CARD19Q96LW7 228 aa7.23□□□□□ -1.25
HMGCS1-204ENST00000507293 A0A1B0GUT8 65 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 HIGD1CA8MV81 97 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 SS18Q15532 418 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 TMEM241Q24JQ0 296 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 CLLU1Q5K131 121 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 MRPL52Q86TS9 123 aaKnown RBP7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 TSKUQ8WUA8 353 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 TMEM191AQ9H0A3 160 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 PKIGQ9Y2B9 76 aa7.22□□□□□ -1.25
HMGCS1-204ENST00000507293 C7orf77A4D0Y5 90 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 RAB4AP20338 218 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 POLR2KP53803 58 aaKnown RBP7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 LINC01551Q86U37 167 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 AMN1Q8IY45 258 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 CDC42SE2Q9NRR3 84 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 LINC00474Q9P2X8 69 aa7.21□□□□□ -1.26
HMGCS1-204ENST00000507293 TRBV27A0A0K0K1C4 114 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 SMKR1H3BMG3 65 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 ZNF561-AS1K7EIQ3 104 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 SRSF3P84103 164 aaKnown RBP7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 IFITM2Q01629 132 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 SYCNQ0VAF6 134 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 CD164L2Q6UWJ8 174 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 ZNF664Q8N3J9 261 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 LINC01600Q96MT4 127 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 NAT8Q9UHE5 227 aa7.2□□□□□ -1.26
HMGCS1-204ENST00000507293 C9JQL5 133 aa7.19□□□□□ -1.26
HMGCS1-204ENST00000507293 CAMPP49913 170 aa7.19□□□□□ -1.26
HMGCS1-204ENST00000507293 OSTCQ9NRP0 149 aa7.19□□□□□ -1.26
HMGCS1-204ENST00000507293 FCER1GP30273 86 aa7.18□□□□□ -1.26
HMGCS1-204ENST00000507293 ODF1Q14990 250 aa7.18□□□□□ -1.26
HMGCS1-204ENST00000507293 IGLV4-69A0A075B6H9 119 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 A0A0J9YXV3 536 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 VCYO14598 125 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 PTTG1IPP53801 180 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 RPL23P62829 140 aaKnown RBP7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 GAGE2BQ13066 116 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 RIGQ13278 110 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 ADIRFQ15847 76 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 RNASE13Q5GAN3 156 aaKnown RBP7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 SPINK6Q6UWN8 80 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 NRACQ8N912 160 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 UBE2D4Q9Y2X8 147 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 V9GYV3 84 aa7.17□□□□□ -1.26
HMGCS1-204ENST00000507293 LOC107984640A0A0U1RRK4 108 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 C1orf196B1AJZ1 125 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 COX7A2LO14548 114 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 MALP21145 153 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 SUMO2P61956 95 aaKnown RBP7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 REG3GQ6UW15 175 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 UQCC3Q6UW78 93 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 Q6ZRP5 223 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 NUP35Q8NFH5 326 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 ISOC2Q96AB3 205 aa7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 CSDC2Q9Y534 153 aaKnown RBP7.16□□□□□ -1.26
HMGCS1-204ENST00000507293 TRAV13-1A0A0B4J241 112 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 PPP1R17O96001 155 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 SMAGPQ0VAQ4 97 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 Q6ZUT4 128 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 CAMK2N2Q96S95 79 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 KIR2DL4Q99706 377 aa7.15□□□□□ -1.26
HMGCS1-204ENST00000507293 TNXBP22105 4242 aa7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 PPP1R2P9O14990 202 aa7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 SRSF9Q13242 221 aaKnown RBP eCLIP7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 MRPL51Q4U2R6 128 aaKnown RBP7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 C5orf38Q86SI9 138 aa7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 NAT8BQ9UHF3 227 aa7.14□□□□□ -1.27
HMGCS1-204ENST00000507293 A0A1W2PNN7 141 aa7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 APOMO95445 188 aa7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 KRTAP10-8P60410 259 aa7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 PNRC1Q12796 327 aaPredicted RBP7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 FAM104BQ5XKR9 115 aa7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 TIMM21Q9BVV7 248 aa7.13□□□□□ -1.27
HMGCS1-204ENST00000507293 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.12□□□□□ -1.27
HMGCS1-204ENST00000507293 RPL18AQ02543 176 aaKnown RBP7.12□□□□□ -1.27
HMGCS1-204ENST00000507293 SPAG11BQ08648 103 aa7.12□□□□□ -1.27
HMGCS1-204ENST00000507293 TMEM18Q96B42 140 aa7.12□□□□□ -1.27
HMGCS1-204ENST00000507293 C2orf48Q96LS8 159 aa7.12□□□□□ -1.27
HMGCS1-204ENST00000507293 SMIM27A0A1W2PRY6 76 aa7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 LINC00862A6NCI5 91 aa7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 RPL39P62891 51 aaKnown RBP7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 C9orf116Q5BN46 136 aaPredicted RBP7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 COMMD7Q86VX2 200 aa7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 OPRPNQ99935 248 aaPredicted RBP7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 C20orf78Q9BR46 151 aa7.11□□□□□ -1.27
HMGCS1-204ENST00000507293 TMEM218A2RU14 115 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms