RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PPP1R17O96001 155 aa13.15□□□□□ -0.3
SQSTM1-210ENST00000506042 CAMPP49913 170 aa13.14□□□□□ -0.31
SQSTM1-210ENST00000506042 SLC51BQ86UW2 128 aa13.14□□□□□ -0.31
SQSTM1-210ENST00000506042 OCC1Q8TAD7 63 aa13.14□□□□□ -0.31
SQSTM1-210ENST00000506042 C7orf77A4D0Y5 90 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 FAM231BA6NCW3 169 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 C1orf196B1AJZ1 125 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 APOMO95445 188 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 FCER1GP30273 86 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 CT83Q5H943 113 aa13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 MRPL52Q86TS9 123 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-210ENST00000506042 UBR4Q5T4S7 5183 aa13.12□□□□□ -0.31
SQSTM1-210ENST00000506042 TMEM250H0YL14 139 aa13.12□□□□□ -0.31
SQSTM1-210ENST00000506042 FAM231DQ6ZW35 169 aa13.12□□□□□ -0.31
SQSTM1-210ENST00000506042 ZNF664Q8N3J9 261 aa13.12□□□□□ -0.31
SQSTM1-210ENST00000506042 COX7A2LO14548 114 aa13.11□□□□□ -0.31
SQSTM1-210ENST00000506042 TSKUQ8WUA8 353 aa13.11□□□□□ -0.31
SQSTM1-210ENST00000506042 TMEM18Q96B42 140 aa13.11□□□□□ -0.31
SQSTM1-210ENST00000506042 IGLV4-69A0A075B6H9 119 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 ESDP10768 282 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 PTTG1IPP53801 180 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 CAMK2N2Q96S95 79 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 CDC42SE2Q9NRR3 84 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 TMEM242Q9NWH2 141 aa13.1□□□□□ -0.31
SQSTM1-210ENST00000506042 A0A1B0GUT8 65 aa13.09□□□□□ -0.31
SQSTM1-210ENST00000506042 K7EN84 100 aa13.09□□□□□ -0.31
SQSTM1-210ENST00000506042 GAGE2BQ13066 116 aa13.09□□□□□ -0.31
SQSTM1-210ENST00000506042 ODF1Q14990 250 aa13.09□□□□□ -0.31
SQSTM1-210ENST00000506042 KIR2DL4Q99706 377 aa13.09□□□□□ -0.31
SQSTM1-210ENST00000506042 TSHBP01222 138 aa13.08□□□□□ -0.32
SQSTM1-210ENST00000506042 MT-ND6P03923 174 aa13.08□□□□□ -0.32
SQSTM1-210ENST00000506042 BLOC1S1P78537 153 aa13.08□□□□□ -0.32
SQSTM1-210ENST00000506042 TMEM191AQ9H0A3 160 aa13.08□□□□□ -0.32
SQSTM1-210ENST00000506042 TRBV27A0A0K0K1C4 114 aa13.07□□□□□ -0.32
SQSTM1-210ENST00000506042 VCYO14598 125 aa13.07□□□□□ -0.32
SQSTM1-210ENST00000506042 FOXA3P55318 350 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-210ENST00000506042 KRTAP10-8P60410 259 aa13.07□□□□□ -0.32
SQSTM1-210ENST00000506042 LINC00526Q96FQ7 95 aa13.06□□□□□ -0.32
SQSTM1-210ENST00000506042 C2orf48Q96LS8 159 aa13.06□□□□□ -0.32
SQSTM1-210ENST00000506042 CSDC2Q9Y534 153 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-210ENST00000506042 PPP1R2P9O14990 202 aa13.05□□□□□ -0.32
SQSTM1-210ENST00000506042 TCAPO15273 167 aa13.05□□□□□ -0.32
SQSTM1-210ENST00000506042 CEBPGP53567 150 aa13.05□□□□□ -0.32
SQSTM1-210ENST00000506042 SRSF9Q13242 221 aaKnown RBP eCLIP13.05□□□□□ -0.32
SQSTM1-210ENST00000506042 RPL18AQ02543 176 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-210ENST00000506042 RIGQ13278 110 aa13.04□□□□□ -0.32
SQSTM1-210ENST00000506042 HIGD1CA8MV81 97 aa13.03□□□□□ -0.32
SQSTM1-210ENST00000506042 F8WDY8 70 aa13.03□□□□□ -0.32
SQSTM1-210ENST00000506042 POLR2KP53803 58 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-210ENST00000506042 TCTE3Q8IZS6 198 aa13.02□□□□□ -0.33
SQSTM1-210ENST00000506042 NUP35Q8NFH5 326 aa13.01□□□□□ -0.33
SQSTM1-210ENST00000506042 IMMP2LQ96T52 175 aa13.01□□□□□ -0.33
SQSTM1-210ENST00000506042 SMIM7Q9BQ49 75 aa13.01□□□□□ -0.33
SQSTM1-210ENST00000506042 PSORS1C2Q9UIG4 136 aa13.01□□□□□ -0.33
SQSTM1-210ENST00000506042 RAB4AP20338 218 aa13□□□□□ -0.33
SQSTM1-210ENST00000506042 SUMO2P61956 95 aaKnown RBP13□□□□□ -0.33
SQSTM1-210ENST00000506042 RNF151Q2KHN1 245 aa13□□□□□ -0.33
SQSTM1-210ENST00000506042 OR10D4PQ8NGN7 298 aa13□□□□□ -0.33
SQSTM1-210ENST00000506042 DIRC1Q969H9 104 aa13□□□□□ -0.33
SQSTM1-210ENST00000506042 EIF5A2Q9GZV4 153 aaKnown RBP13□□□□□ -0.33
SQSTM1-210ENST00000506042 TRAV13-1A0A0B4J241 112 aa12.99□□□□□ -0.33
SQSTM1-210ENST00000506042 SPAG11BQ08648 103 aa12.98□□□□□ -0.33
SQSTM1-210ENST00000506042 C9orf116Q5BN46 136 aaPredicted RBP12.98□□□□□ -0.33
SQSTM1-210ENST00000506042 C1orf137Q5JT78 98 aa12.98□□□□□ -0.33
SQSTM1-210ENST00000506042 TIMM21Q9BVV7 248 aa12.98□□□□□ -0.33
SQSTM1-210ENST00000506042 OSTCQ9NRP0 149 aa12.98□□□□□ -0.33
SQSTM1-210ENST00000506042 AMN1Q8IY45 258 aa12.97□□□□□ -0.33
SQSTM1-210ENST00000506042 UBE2D4Q9Y2X8 147 aa12.97□□□□□ -0.33
SQSTM1-210ENST00000506042 ZNF727A8MUV8 499 aa12.96□□□□□ -0.33
SQSTM1-210ENST00000506042 C5orf38Q86SI9 138 aa12.95□□□□□ -0.34
SQSTM1-210ENST00000506042 LINC00862A6NCI5 91 aa12.94□□□□□ -0.34
SQSTM1-210ENST00000506042 NDUFA1O15239 70 aa12.94□□□□□ -0.34
SQSTM1-210ENST00000506042 TMEM241Q24JQ0 296 aa12.94□□□□□ -0.34
SQSTM1-210ENST00000506042 LINC01551Q86U37 167 aa12.94□□□□□ -0.34
SQSTM1-210ENST00000506042 NAT8BQ9UHF3 227 aa12.94□□□□□ -0.34
SQSTM1-210ENST00000506042 A0A1B0GW15 77 aa12.93□□□□□ -0.34
SQSTM1-210ENST00000506042 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-210ENST00000506042 C20orf78Q9BR46 151 aa12.93□□□□□ -0.34
SQSTM1-210ENST00000506042 MRPL35Q9NZE8 188 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-210ENST00000506042 A0A1W2PNN7 141 aa12.92□□□□□ -0.34
SQSTM1-210ENST00000506042 S100A8P05109 93 aa12.92□□□□□ -0.34
SQSTM1-210ENST00000506042 ORAOV1Q8WV07 137 aa12.92□□□□□ -0.34
SQSTM1-210ENST00000506042 A0A087WZ39 114 aa12.91□□□□□ -0.34
SQSTM1-210ENST00000506042 GAS8-AS1O95177 125 aa12.91□□□□□ -0.34
SQSTM1-210ENST00000506042 ALKAL2Q6UX46 152 aa12.91□□□□□ -0.34
SQSTM1-210ENST00000506042 SPANXA1Q9NS26 97 aa12.91□□□□□ -0.34
SQSTM1-210ENST00000506042 RNASE13Q5GAN3 156 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-210ENST00000506042 Q6ZUT4 128 aa12.9□□□□□ -0.34
SQSTM1-210ENST00000506042 TGIF2-C20orf24A0A0A6YYL0 155 aa12.89□□□□□ -0.35
SQSTM1-210ENST00000506042 IGLV7-43P04211 117 aa12.89□□□□□ -0.35
SQSTM1-210ENST00000506042 CKS2P33552 79 aa12.89□□□□□ -0.35
SQSTM1-210ENST00000506042 FAM74A3Q4VXF1 159 aa12.89□□□□□ -0.35
SQSTM1-210ENST00000506042 F8W036 122 aa12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 SMKR1H3BMG3 65 aa12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 UBE2D1P51668 147 aa12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 RPL32P62910 135 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 HBBP68871 147 aa12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 PHF5AQ7RTV0 110 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 NRACQ8N912 160 aa12.88□□□□□ -0.35
SQSTM1-210ENST00000506042 OPRPNQ99935 248 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms