RNA–Protein interactions for RNA: ENST00000505307.5

UBE2D3-220, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5

Gene UBE2D3, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-220ENST00000505307 LINC00474Q9P2X8 69 aa12.62□□□□□ -0.39
UBE2D3-220ENST00000505307 IGHV1-58A0A0C4DH39 117 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 TRBV27A0A0K0K1C4 114 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 ZNF727A8MUV8 499 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 XCL1P47992 114 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 SS18Q15532 418 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 MAJINQ3KP22 176 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 TMEM242Q9NWH2 141 aa12.61□□□□□ -0.39
UBE2D3-220ENST00000505307 CCL25O15444 150 aa12.6□□□□□ -0.39
UBE2D3-220ENST00000505307 PPP1R17O96001 155 aa12.6□□□□□ -0.39
UBE2D3-220ENST00000505307 RAB4AP20338 218 aa12.6□□□□□ -0.39
UBE2D3-220ENST00000505307 IGKV2-24A0A0C4DH68 120 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 C7orf77A4D0Y5 90 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 PHOX2AO14813 284 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 GAS8-AS1O95177 125 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 SMAGPQ0VAQ4 97 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 RIGQ13278 110 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 CDC42SE2Q9NRR3 84 aa12.59□□□□□ -0.39
UBE2D3-220ENST00000505307 VCYO14598 125 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 MT1HL1P0DM35 61 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 UBR4Q5T4S7 5183 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 CD164L2Q6UWJ8 174 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 ZNF664Q8N3J9 261 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 STPG4Q8N801 248 aa12.58□□□□□ -0.4
UBE2D3-220ENST00000505307 SRP19P09132 144 aaKnown RBP12.57□□□□□ -0.4
UBE2D3-220ENST00000505307 AMN1Q8IY45 258 aa12.57□□□□□ -0.4
UBE2D3-220ENST00000505307 CSDC2Q9Y534 153 aaKnown RBP12.56□□□□□ -0.4
UBE2D3-220ENST00000505307 hCG_2014768A0A024R1R8 64 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 A0A096LNI7 61 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 ZNF561-AS1K7EIQ3 104 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 FCER1GP30273 86 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 FAM74A3Q4VXF1 159 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 CARD19Q96LW7 228 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 V9GYV3 84 aa12.55□□□□□ -0.4
UBE2D3-220ENST00000505307 C1orf196B1AJZ1 125 aa12.54□□□□□ -0.4
UBE2D3-220ENST00000505307 TMEM241Q24JQ0 296 aa12.54□□□□□ -0.4
UBE2D3-220ENST00000505307 NUP35Q8NFH5 326 aa12.54□□□□□ -0.4
UBE2D3-220ENST00000505307 KIR2DL4Q99706 377 aa12.54□□□□□ -0.4
UBE2D3-220ENST00000505307 NAT8BQ9UHF3 227 aa12.54□□□□□ -0.4
UBE2D3-220ENST00000505307 PPP1R2P9O14990 202 aa12.53□□□□□ -0.4
UBE2D3-220ENST00000505307 SUMO2P61956 95 aaKnown RBP12.53□□□□□ -0.4
UBE2D3-220ENST00000505307 SYCNQ0VAF6 134 aa12.53□□□□□ -0.4
UBE2D3-220ENST00000505307 ISOC2Q96AB3 205 aa12.53□□□□□ -0.4
UBE2D3-220ENST00000505307 PRR3P79522 188 aaKnown RBP12.52□□□□□ -0.41
UBE2D3-220ENST00000505307 MALP21145 153 aa12.51□□□□□ -0.41
UBE2D3-220ENST00000505307 NRACQ8N912 160 aa12.51□□□□□ -0.41
UBE2D3-220ENST00000505307 TMEM18Q96B42 140 aa12.51□□□□□ -0.41
UBE2D3-220ENST00000505307 LINC00862A6NCI5 91 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 SMKR1H3BMG3 65 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 COX7A2LO14548 114 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 CAMPP49913 170 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 LINC00526Q96FQ7 95 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 UBE2D4Q9Y2X8 147 aa12.5□□□□□ -0.41
UBE2D3-220ENST00000505307 A0A1B0GW15 77 aa12.49□□□□□ -0.41
UBE2D3-220ENST00000505307 TCAPO15273 167 aa12.49□□□□□ -0.41
UBE2D3-220ENST00000505307 RPL23P62829 140 aaKnown RBP12.49□□□□□ -0.41
UBE2D3-220ENST00000505307 FAM104BQ5XKR9 115 aa12.49□□□□□ -0.41
UBE2D3-220ENST00000505307 TIMM21Q9BVV7 248 aa12.49□□□□□ -0.41
UBE2D3-220ENST00000505307 C20orf78Q9BR46 151 aa12.48□□□□□ -0.41
UBE2D3-220ENST00000505307 NAT8Q9UHE5 227 aa12.48□□□□□ -0.41
UBE2D3-220ENST00000505307 SMIM27A0A1W2PRY6 76 aa12.47□□□□□ -0.41
UBE2D3-220ENST00000505307 RPL32P62910 135 aaKnown RBP12.47□□□□□ -0.41
UBE2D3-220ENST00000505307 MRPL51Q4U2R6 128 aaKnown RBP12.47□□□□□ -0.41
UBE2D3-220ENST00000505307 LINC01600Q96MT4 127 aa12.47□□□□□ -0.41
UBE2D3-220ENST00000505307 TRBV24-1A0A075B6N3 115 aa12.46□□□□□ -0.41
UBE2D3-220ENST00000505307 LOC107984640A0A0U1RRK4 108 aa12.46□□□□□ -0.41
UBE2D3-220ENST00000505307 PTTG1IPP53801 180 aa12.46□□□□□ -0.41
UBE2D3-220ENST00000505307 ADIRFQ15847 76 aa12.46□□□□□ -0.41
UBE2D3-220ENST00000505307 SPINK6Q6UWN8 80 aa12.46□□□□□ -0.41
UBE2D3-220ENST00000505307 IGLV4-69A0A075B6H9 119 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 TRAV13-1A0A0B4J241 112 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 APOMO95445 188 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 Q6ZRP5 223 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 C2orf48Q96LS8 159 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 SMDT1Q9H4I9 107 aa12.45□□□□□ -0.42
UBE2D3-220ENST00000505307 S100A8P05109 93 aa12.44□□□□□ -0.42
UBE2D3-220ENST00000505307 CKS2P33552 79 aa12.44□□□□□ -0.42
UBE2D3-220ENST00000505307 PEA15Q15121 130 aa12.44□□□□□ -0.42
UBE2D3-220ENST00000505307 CAMK2N2Q96S95 79 aa12.44□□□□□ -0.42
UBE2D3-220ENST00000505307 REG3GQ6UW15 175 aa12.43□□□□□ -0.42
UBE2D3-220ENST00000505307 GAGE2BQ13066 116 aa12.42□□□□□ -0.42
UBE2D3-220ENST00000505307 RNASE13Q5GAN3 156 aaKnown RBP12.42□□□□□ -0.42
UBE2D3-220ENST00000505307 F8W036 122 aa12.41□□□□□ -0.42
UBE2D3-220ENST00000505307 Q6ZUT4 128 aa12.41□□□□□ -0.42
UBE2D3-220ENST00000505307 C9JQL5 133 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 F8WDY8 70 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 TNFRSF6BO95407 300 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 RNF151Q2KHN1 245 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 C5orf38Q86SI9 138 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 SPANXA1Q9NS26 97 aa12.4□□□□□ -0.42
UBE2D3-220ENST00000505307 A0A0J9YXV3 536 aa12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 PPBPP02775 128 aa12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 HBBP68871 147 aa12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 SRSF9Q13242 221 aaKnown RBP eCLIP12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 OR10D4PQ8NGN7 298 aa12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 SMIM2Q9BVW6 85 aa12.39□□□□□ -0.43
UBE2D3-220ENST00000505307 MRPS36P82909 103 aaKnown RBP12.38□□□□□ -0.43
UBE2D3-220ENST00000505307 SPAG11BQ08648 103 aa12.38□□□□□ -0.43
UBE2D3-220ENST00000505307 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.37□□□□□ -0.43
UBE2D3-220ENST00000505307 D6R8Y8 96 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms