RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 STPG4Q8N801 248 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 C15orf56Q8N910 161 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 ISOC2Q96AB3 205 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 MRAP2Q96G30 205 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.33□□□□□ -1.24
COL6A3-213ENST00000493475 TRAV26-2A0A0B4J265 109 aa7.33□□□□□ -1.24
COL6A3-213ENST00000493475 IGKV2-29A2NJV5 120 aaPredicted RBP7.33□□□□□ -1.24
COL6A3-213ENST00000493475 GATCO43716 136 aaKnown RBP7.33□□□□□ -1.24
COL6A3-213ENST00000493475 RNASE7Q9H1E1 156 aaKnown RBP7.33□□□□□ -1.24
COL6A3-213ENST00000493475 ST20Q9HBF5 79 aa7.33□□□□□ -1.24
COL6A3-213ENST00000493475 UBR4Q5T4S7 5183 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 TRBV20OR9-2A0A075B6H5 130 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 KRTAP9-7A8MTY7 169 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 PPP1R17O96001 155 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 SLPIP03973 132 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 XCL1P47992 114 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 CARD19Q96LW7 228 aa7.32□□□□□ -1.24
COL6A3-213ENST00000493475 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 TMEM250H0YL14 139 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 CCL25O15444 150 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 MALP21145 153 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 BLOC1S1P78537 153 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 PRR3P79522 188 aaKnown RBP7.31□□□□□ -1.24
COL6A3-213ENST00000493475 CT83Q5H943 113 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 PRSS3P2Q8NHM4 247 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 LYPD6BQ8NI32 183 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 OCC1Q8TAD7 63 aa7.31□□□□□ -1.24
COL6A3-213ENST00000493475 TRBV6-5A0A0K0K1A5 114 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 MT1HL1P0DM35 61 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 FCER1GP30273 86 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 FOXI1Q12951 378 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 SPINK6Q6UWN8 80 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 FAM231DQ6ZW35 169 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 AKAP14Q86UN6 197 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 TCTE3Q8IZS6 198 aa7.3□□□□□ -1.24
COL6A3-213ENST00000493475 RPL39LQ96EH5 51 aaKnown RBP7.3□□□□□ -1.24
COL6A3-213ENST00000493475 LINC00959A0A1B0GUT2 108 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 A0A1B0GUT8 65 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 C7orf77A4D0Y5 90 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 CEBPGP53567 150 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 CD164L2Q6UWJ8 174 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 Q6ZRP5 223 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 TMEM18Q96B42 140 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 LINC01600Q96MT4 127 aa7.29□□□□□ -1.24
COL6A3-213ENST00000493475 A0A096LNI7 61 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 C1orf196B1AJZ1 125 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 K7EN84 100 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 APOMO95445 188 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 SYCNQ0VAF6 134 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 MRPL52Q86TS9 123 aaKnown RBP7.28□□□□□ -1.24
COL6A3-213ENST00000493475 KIR2DL4Q99706 377 aa7.28□□□□□ -1.24
COL6A3-213ENST00000493475 LOC107984640A0A0U1RRK4 108 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 FAM231BA6NCW3 169 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 COX7A2LO14548 114 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 VCYO14598 125 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 CAMPP49913 170 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 ZNF664Q8N3J9 261 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 TMEM191AQ9H0A3 160 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 TMEM242Q9NWH2 141 aa7.27□□□□□ -1.25
COL6A3-213ENST00000493475 TRBV27A0A0K0K1C4 114 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 PPP1R2P9O14990 202 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 TCAPO15273 167 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 ESDP10768 282 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 FOXA3P55318 350 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-213ENST00000493475 RIGQ13278 110 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 TSKUQ8WUA8 353 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 EIF5A2Q9GZV4 153 aaKnown RBP7.26□□□□□ -1.25
COL6A3-213ENST00000493475 CDC42SE2Q9NRR3 84 aa7.26□□□□□ -1.25
COL6A3-213ENST00000493475 IGLV4-69A0A075B6H9 119 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 A0A0J9YXV3 536 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 HIGD1CA8MV81 97 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 TSHBP01222 138 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 CAMK2N2Q96S95 79 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 SMIM7Q9BQ49 75 aa7.25□□□□□ -1.25
COL6A3-213ENST00000493475 PTTG1IPP53801 180 aa7.24□□□□□ -1.25
COL6A3-213ENST00000493475 GAGE2BQ13066 116 aa7.24□□□□□ -1.25
COL6A3-213ENST00000493475 CSDC2Q9Y534 153 aaKnown RBP7.24□□□□□ -1.25
COL6A3-213ENST00000493475 PKHD1L1Q86WI1 4243 aa7.24□□□□□ -1.25
COL6A3-213ENST00000493475 ZNF727A8MUV8 499 aa7.23□□□□□ -1.25
COL6A3-213ENST00000493475 OSTCQ9NRP0 149 aa7.23□□□□□ -1.25
COL6A3-213ENST00000493475 MT-ND6P03923 174 aa7.22□□□□□ -1.25
COL6A3-213ENST00000493475 RAB4AP20338 218 aa7.22□□□□□ -1.25
COL6A3-213ENST00000493475 POLR2KP53803 58 aaKnown RBP7.22□□□□□ -1.25
COL6A3-213ENST00000493475 SUMO2P61956 95 aaKnown RBP7.22□□□□□ -1.25
COL6A3-213ENST00000493475 LINC00526Q96FQ7 95 aa7.22□□□□□ -1.25
COL6A3-213ENST00000493475 C2orf48Q96LS8 159 aa7.22□□□□□ -1.25
COL6A3-213ENST00000493475 NAT8BQ9UHF3 227 aa7.22□□□□□ -1.25
COL6A3-213ENST00000493475 TRAV13-1A0A0B4J241 112 aa7.21□□□□□ -1.26
COL6A3-213ENST00000493475 F8WDY8 70 aa7.21□□□□□ -1.26
COL6A3-213ENST00000493475 RPL18AQ02543 176 aaKnown RBP7.21□□□□□ -1.26
COL6A3-213ENST00000493475 ALKAL2Q6UX46 152 aa7.21□□□□□ -1.26
COL6A3-213ENST00000493475 LINC01551Q86U37 167 aa7.21□□□□□ -1.26
COL6A3-213ENST00000493475 AMN1Q8IY45 258 aa7.21□□□□□ -1.26
COL6A3-213ENST00000493475 A0A1B0GW15 77 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 LINC00862A6NCI5 91 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 S100A8P05109 93 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 ODF1Q14990 250 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 FAM74A3Q4VXF1 159 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 LCE5AQ5TCM9 118 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 OR10D4PQ8NGN7 298 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms