RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 LINC00862A6NCI5 91 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 PANO1I0J062 215 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 PPP1R2P9O14990 202 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 NPYP01303 97 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 FCER1GP30273 86 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 PNRC1Q12796 327 aaPredicted RBP11.68□□□□□ -0.54
COL9A3-214ENST00000490398 DGAT2L7PQ6IED9 249 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 MRPL52Q86TS9 123 aaKnown RBP11.68□□□□□ -0.54
COL9A3-214ENST00000490398 CHAC1Q9BUX1 264 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 LINC00959A0A1B0GUT2 108 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 PPP1R17O96001 155 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 INAFM2P0DMQ5 153 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 FOXI1Q12951 378 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 CLRN3Q8NCR9 226 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 CIRBP-AS1Q8TBR5 109 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 TMEM101Q96IK0 257 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 BTF3L4Q96K17 158 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 C20orf78Q9BR46 151 aa11.67□□□□□ -0.54
COL9A3-214ENST00000490398 F8W036 122 aa11.66□□□□□ -0.54
COL9A3-214ENST00000490398 FAM229AH3BQW9 127 aa11.66□□□□□ -0.54
COL9A3-214ENST00000490398 XCL1P47992 114 aa11.66□□□□□ -0.54
COL9A3-214ENST00000490398 RNASE13Q5GAN3 156 aaKnown RBP11.66□□□□□ -0.54
COL9A3-214ENST00000490398 ZNF664Q8N3J9 261 aa11.66□□□□□ -0.54
COL9A3-214ENST00000490398 UBE2D4Q9Y2X8 147 aa11.66□□□□□ -0.54
COL9A3-214ENST00000490398 CCL25O15444 150 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 MT-ND4LP03901 98 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 S100A8P05109 93 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 CNBPP62633 177 aaKnown RBP11.65□□□□□ -0.54
COL9A3-214ENST00000490398 HIGD2BQ4VC39 106 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 SDIM1Q6ZPB5 146 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 ATP5L2Q7Z4Y8 100 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 LINC00528Q8N1L1 170 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 ANAPC16Q96DE5 110 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 KIR2DL4Q99706 377 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 SMIM2Q9BVW6 85 aa11.65□□□□□ -0.54
COL9A3-214ENST00000490398 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.65□□□□□ -0.54
COL9A3-214ENST00000490398 TMEM218A2RU14 115 aa11.64□□□□□ -0.55
COL9A3-214ENST00000490398 RPL32P62910 135 aaKnown RBP11.64□□□□□ -0.55
COL9A3-214ENST00000490398 TCAPO15273 167 aa11.63□□□□□ -0.55
COL9A3-214ENST00000490398 RPL39P62891 51 aaKnown RBP11.63□□□□□ -0.55
COL9A3-214ENST00000490398 Q6ZUT4 128 aa11.63□□□□□ -0.55
COL9A3-214ENST00000490398 FAM104AQ969W3 186 aa11.63□□□□□ -0.55
COL9A3-214ENST00000490398 TMEM136Q6ZRR5 245 aa11.62□□□□□ -0.55
COL9A3-214ENST00000490398 PRELID3AQ96N28 172 aa11.62□□□□□ -0.55
COL9A3-214ENST00000490398 UQCC3Q6UW78 93 aa11.61□□□□□ -0.55
COL9A3-214ENST00000490398 ORMDL3Q8N138 153 aa11.61□□□□□ -0.55
COL9A3-214ENST00000490398 LINC00526Q96FQ7 95 aa11.61□□□□□ -0.55
COL9A3-214ENST00000490398 FLG2Q5D862 2391 aaPredicted RBP11.6□□□□□ -0.55
COL9A3-214ENST00000490398 PPBPP02775 128 aa11.6□□□□□ -0.55
COL9A3-214ENST00000490398 OPRPNQ99935 248 aaPredicted RBP11.6□□□□□ -0.55
COL9A3-214ENST00000490398 AP5S1Q9NUS5 200 aa11.6□□□□□ -0.55
COL9A3-214ENST00000490398 CSDC2Q9Y534 153 aaKnown RBP11.6□□□□□ -0.55
COL9A3-214ENST00000490398 GVQW2A0A096LPI5 108 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-214ENST00000490398 PHOX2AO14813 284 aa11.59□□□□□ -0.55
COL9A3-214ENST00000490398 CHTF8P0CG12 524 aa11.59□□□□□ -0.55
COL9A3-214ENST00000490398 KRTAP10-4P60372 401 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-214ENST00000490398 SS18Q15532 418 aa11.59□□□□□ -0.55
COL9A3-214ENST00000490398 CFAP161Q6P656 301 aa11.59□□□□□ -0.55
COL9A3-214ENST00000490398 COMMD7Q86VX2 200 aa11.59□□□□□ -0.55
COL9A3-214ENST00000490398 LOC389332A0A1B0GUA5 103 aa11.58□□□□□ -0.56
COL9A3-214ENST00000490398 TIMM21Q9BVV7 248 aa11.58□□□□□ -0.56
COL9A3-214ENST00000490398 IGHV3-64A0A075B6Q5 118 aa11.57□□□□□ -0.56
COL9A3-214ENST00000490398 TRAV13-1A0A0B4J241 112 aa11.57□□□□□ -0.56
COL9A3-214ENST00000490398 CD164L2Q6UWJ8 174 aa11.57□□□□□ -0.56
COL9A3-214ENST00000490398 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.55□□□□□ -0.56
COL9A3-214ENST00000490398 CIRBPQ14011 172 aaKnown RBP11.55□□□□□ -0.56
COL9A3-214ENST00000490398 SEC11CQ9BY50 192 aa11.55□□□□□ -0.56
COL9A3-214ENST00000490398 IGHV1-58A0A0C4DH39 117 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 PRSS47A8MTI9 375 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 COX6A2Q02221 97 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 PRSS3P2Q8NHM4 247 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 TMEM18Q96B42 140 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 IMMP2LQ96T52 175 aa11.54□□□□□ -0.56
COL9A3-214ENST00000490398 C1orf196B1AJZ1 125 aa11.53□□□□□ -0.56
COL9A3-214ENST00000490398 PLA2G1BP04054 148 aaKnown RBP11.53□□□□□ -0.56
COL9A3-214ENST00000490398 C5orf38Q86SI9 138 aa11.53□□□□□ -0.56
COL9A3-214ENST00000490398 CTDSP1Q9GZU7 261 aa11.53□□□□□ -0.56
COL9A3-214ENST00000490398 SMAGPQ0VAQ4 97 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 KIAA1644Q3SXP7 199 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 C10orf91Q5T1B1 145 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 SPACA4Q8TDM5 124 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 MAP1LC3AQ9H492 121 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 SPANXA1Q9NS26 97 aa11.52□□□□□ -0.57
COL9A3-214ENST00000490398 RAB5AP20339 215 aa11.51□□□□□ -0.57
COL9A3-214ENST00000490398 Q8N8P6 123 aa11.51□□□□□ -0.57
COL9A3-214ENST00000490398 LAMTOR2Q9Y2Q5 125 aa11.51□□□□□ -0.57
COL9A3-214ENST00000490398 A0A087WYN8 130 aa11.5□□□□□ -0.57
COL9A3-214ENST00000490398 COX7A2LO14548 114 aa11.5□□□□□ -0.57
COL9A3-214ENST00000490398 MRPS36P82909 103 aaKnown RBP11.5□□□□□ -0.57
COL9A3-214ENST00000490398 ZC2HC1BQ5TFG8 222 aa11.5□□□□□ -0.57
COL9A3-214ENST00000490398 IGLV4-3A0A075B6K6 122 aa11.49□□□□□ -0.57
COL9A3-214ENST00000490398 IGLV4-69A0A075B6H9 119 aa11.48□□□□□ -0.57
COL9A3-214ENST00000490398 A0A096LNI7 61 aa11.48□□□□□ -0.57
COL9A3-214ENST00000490398 IGKV2-24A0A0C4DH68 120 aa11.48□□□□□ -0.57
COL9A3-214ENST00000490398 MALP21145 153 aa11.48□□□□□ -0.57
COL9A3-214ENST00000490398 HNRNPA3P51991 378 aaKnown RBP11.48□□□□□ -0.57
COL9A3-214ENST00000490398 CARHSP1Q9Y2V2 147 aaKnown RBP11.48□□□□□ -0.57
COL9A3-214ENST00000490398 DMBT1Q9UGM3 2413 aaPredicted RBP11.47□□□□□ -0.57
COL9A3-214ENST00000490398 IFITM10A6NMD0 228 aa11.47□□□□□ -0.57
COL9A3-214ENST00000490398 ZNF561-AS1K7EIQ3 104 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms