RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZNF479Q96JC4 524 aa8.3□□□□□ -1.08
TRIM40-208ENST00000489892 IGHV3-73A0A0B4J1V6 119 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 MYMXA0A1B0GTQ4 84 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 A0A1W2PPM0 123 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 SDHAF1A6NFY7 115 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 K7ERU9 68 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 ATP5G1P05496 136 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 GCSHP23434 173 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 PMVKQ15126 192 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 Q6ZVH6 145 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 SBSPONQ8IVN8 264 aa8.29□□□□□ -1.08
TRIM40-208ENST00000489892 NHLRC4P0CG21 123 aaPredicted RBP8.28□□□□□ -1.08
TRIM40-208ENST00000489892 CRYBA4P53673 196 aa8.28□□□□□ -1.08
TRIM40-208ENST00000489892 B9D2Q9BPU9 175 aa8.28□□□□□ -1.08
TRIM40-208ENST00000489892 PRO0255Q9UI72 69 aa8.28□□□□□ -1.08
TRIM40-208ENST00000489892 NACAE9PAV3 2078 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 TRBV7-3A0A075B6L6 115 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 PRSS29PA6NIE9 313 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 C11orf86A6NJI1 115 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 H3BUT2 72 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 I3L3M4 83 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 DAZ4Q86SG3 579 aaKnown RBP8.27□□□□□ -1.09
TRIM40-208ENST00000489892 CST9LQ9H4G1 147 aa8.27□□□□□ -1.09
TRIM40-208ENST00000489892 DAZ3Q9NR90 486 aaKnown RBP8.27□□□□□ -1.09
TRIM40-208ENST00000489892 A0A1B0GWB2 263 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 IGIPA6NJ69 53 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 DEFB4AO15263 64 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 FHL2Q14192 279 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 SH2D6Q7Z4S9 175 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 SLC25A29Q8N8R3 303 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 RETNQ9HD89 108 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 PCLOQ9Y6V0 5065 aa8.26□□□□□ -1.09
TRIM40-208ENST00000489892 RYR2Q92736 4967 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 FXYD2P54710 66 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 SMAGPQ0VAQ4 97 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 LYRM7Q5U5X0 104 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 HIST1H4GQ99525 98 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 SPANXB1Q9NS25 103 aaPredicted RBP8.25□□□□□ -1.09
TRIM40-208ENST00000489892 SPCS1Q9Y6A9 102 aa8.25□□□□□ -1.09
TRIM40-208ENST00000489892 COTL1Q14019 142 aa8.24□□□□□ -1.09
TRIM40-208ENST00000489892 Q6ZSN1 163 aa8.24□□□□□ -1.09
TRIM40-208ENST00000489892 NFE4Q86UQ8 179 aa8.24□□□□□ -1.09
TRIM40-208ENST00000489892 C11orf45Q8TAV5 145 aa8.24□□□□□ -1.09
TRIM40-208ENST00000489892 A0A0J9YWU9 116 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 ZNF815PA8K554 130 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 H3BNG1 76 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 PAX4O43316 350 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 TCTAP57738 103 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 RBX1P62877 108 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 OCIAD2Q56VL3 154 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 ZNRF2Q8NHG8 242 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 PHLDA1Q8WV24 401 aaPredicted RBP8.23□□□□□ -1.09
TRIM40-208ENST00000489892 WWC2-AS2Q96NR7 200 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 NHP2Q9NX24 153 aaKnown RBP8.23□□□□□ -1.09
TRIM40-208ENST00000489892 CELA1Q9UNI1 258 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 PYGO1Q9Y3Y4 419 aa8.23□□□□□ -1.09
TRIM40-208ENST00000489892 STAB2Q8WWQ8 2551 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 IGLV4-69A0A075B6H9 119 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 TRAV26-1A0A087WT03 109 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 F5H768 121 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 UBE2D3P61077 147 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 UBE2D2P62837 147 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 MAPKAPK5-AS1Q8N8E1 139 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 C20orf203Q8NBC4 194 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 RAB37Q96AX2 223 aa8.22□□□□□ -1.09
TRIM40-208ENST00000489892 C12orf74Q32Q52 190 aa8.21□□□□□ -1.1
TRIM40-208ENST00000489892 SCGB1D4Q6XE38 83 aa8.21□□□□□ -1.1
TRIM40-208ENST00000489892 TTTY13Q9BZ97 58 aa8.21□□□□□ -1.1
TRIM40-208ENST00000489892 GTSF1LQ9H1H1 148 aa8.21□□□□□ -1.1
TRIM40-208ENST00000489892 GAGE12JA6NER3 117 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 IGLL5B9A064 214 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 TSHBP01222 138 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 P0DMU3 169 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 FAM231AP0DMU4 169 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 FAM231CP0DMU5 169 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 GYPEP15421 78 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 HTN3P15516 51 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 GAGE4Q13068 117 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 GAGE5Q13069 117 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 MRPL23Q16540 153 aaKnown RBP8.2□□□□□ -1.1
TRIM40-208ENST00000489892 GAGE13Q4V321 117 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 PLEKHB2Q96CS7 222 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 ICOSQ9Y6W8 199 aa8.2□□□□□ -1.1
TRIM40-208ENST00000489892 F8W1H4 67 aa8.19□□□□□ -1.1
TRIM40-208ENST00000489892 H7C423 109 aa8.19□□□□□ -1.1
TRIM40-208ENST00000489892 LEPROTO15243 131 aa8.19□□□□□ -1.1
TRIM40-208ENST00000489892 LGALS3P17931 250 aaKnown RBP8.19□□□□□ -1.1
TRIM40-208ENST00000489892 NEGR1Q7Z3B1 354 aa8.19□□□□□ -1.1
TRIM40-208ENST00000489892 SPANXA1Q9NS26 97 aa8.19□□□□□ -1.1
TRIM40-208ENST00000489892 TRAV10A0A0B4J240 114 aa8.18□□□□□ -1.1
TRIM40-208ENST00000489892 LINC00694P0DN24 101 aa8.18□□□□□ -1.1
TRIM40-208ENST00000489892 ATP6V0E2Q8NHE4 81 aa8.18□□□□□ -1.1
TRIM40-208ENST00000489892 J3QR89 54 aa8.17□□□□□ -1.1
TRIM40-208ENST00000489892 UBE2D1P51668 147 aa8.17□□□□□ -1.1
TRIM40-208ENST00000489892 RPL39P62891 51 aaKnown RBP8.17□□□□□ -1.1
TRIM40-208ENST00000489892 SRSF9Q13242 221 aaKnown RBP eCLIP8.17□□□□□ -1.1
TRIM40-208ENST00000489892 TMEM170BQ5T4T1 132 aa8.17□□□□□ -1.1
TRIM40-208ENST00000489892 Q6ZTC4 211 aa8.17□□□□□ -1.1
TRIM40-208ENST00000489892 TMEM243Q9BU79 118 aa8.17□□□□□ -1.1
TRIM40-208ENST00000489892 VCX2Q9H322 139 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms