RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 TMEM101Q96IK0 257 aa4.56□□□□□ -1.68
COL9A1-209ENST00000489861 TRBV20OR9-2A0A075B6H5 130 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 IGLV10-54A0A075B6I4 117 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 ZNF727A8MUV8 499 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 PHOX2AO14813 284 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 APCSP02743 223 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 PRSS1P07477 247 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 PMCHP20382 165 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 CEBPGP53567 150 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 CLPSL2Q6UWE3 100 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 NTM-AS1Q6ZSK4 140 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 SMIM7Q9BQ49 75 aa4.55□□□□□ -1.68
COL9A1-209ENST00000489861 RNASE7Q9H1E1 156 aaKnown RBP4.55□□□□□ -1.68
COL9A1-209ENST00000489861 A0A1B0GUT8 65 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 I3L3M4 83 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 TCAPO15273 167 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 RIGQ13278 110 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 TSKUQ8WUA8 353 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 MRAP2Q96G30 205 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 SMDT1Q9H4I9 107 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 OSTCQ9NRP0 149 aa4.54□□□□□ -1.68
COL9A1-209ENST00000489861 TRBV6-5A0A0K0K1A5 114 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 A0A1B0GW15 77 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 K7EN84 100 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 PPP1R2P9O14990 202 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 S100A8P05109 93 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 RPS10P46783 165 aaKnown RBP4.53□□□□□ -1.68
COL9A1-209ENST00000489861 CIRBPQ14011 172 aaKnown RBP4.53□□□□□ -1.68
COL9A1-209ENST00000489861 PEA15Q15121 130 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 RNASEKQ6P5S7 137 aaKnown RBP4.53□□□□□ -1.68
COL9A1-209ENST00000489861 REG3GQ6UW15 175 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 SDIM1Q6ZPB5 146 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 GATD1Q8NB37 220 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 C20orf203Q8NBC4 194 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 TMEM18Q96B42 140 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 TMEM191AQ9H0A3 160 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 ST20Q9HBF5 79 aa4.53□□□□□ -1.68
COL9A1-209ENST00000489861 SDHAF1A6NFY7 115 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 HIGD1CA8MV81 97 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 CCL25O15444 150 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 PRR3P79522 188 aaKnown RBP4.52□□□□□ -1.69
COL9A1-209ENST00000489861 SRSF3P84103 164 aaKnown RBP4.52□□□□□ -1.69
COL9A1-209ENST00000489861 PRR4Q16378 134 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 TMEM241Q24JQ0 296 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 LINC01551Q86U37 167 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 OR5A1Q8NGJ0 315 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 GTSF1Q8WW33 167 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 ISOC2Q96AB3 205 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 KIR2DL4Q99706 377 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 KRTAP4-2Q9BYR5 136 aa4.52□□□□□ -1.69
COL9A1-209ENST00000489861 IGLV4-60A0A075B6I1 120 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 A0A087WYN8 130 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 IGHV1-58A0A0C4DH39 117 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 F8W036 122 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 VCYO14598 125 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 FGF6P10767 208 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 FCER1GP30273 86 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 SS18Q15532 418 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 SPINK6Q6UWN8 80 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 SPACA4Q8TDM5 124 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 PLAC8Q9NZF1 115 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 NAT8Q9UHE5 227 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 NAT8BQ9UHF3 227 aa4.51□□□□□ -1.69
COL9A1-209ENST00000489861 TRAV26-2A0A0B4J265 109 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 C7orf77A4D0Y5 90 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 LINC00862A6NCI5 91 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 GAGE12HA6NDE8 117 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 ZNF561-AS1K7EIQ3 104 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 SRP19P09132 144 aaKnown RBP4.5□□□□□ -1.69
COL9A1-209ENST00000489861 SRSF9Q13242 221 aaKnown RBP eCLIP4.5□□□□□ -1.69
COL9A1-209ENST00000489861 KRTAP26-1Q6PEX3 210 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 CDIP1Q9H305 208 aa4.5□□□□□ -1.69
COL9A1-209ENST00000489861 GVQW2A0A096LPI5 108 aaPredicted RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 IGKV3OR2-268A0A0C4DH90 116 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 TRBV27A0A0K0K1C4 114 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 APOMO95445 188 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 CHTF8P0CG12 524 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 RAB4AP20338 218 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 MAJINQ3KP22 176 aa4.49□□□□□ -1.69
COL9A1-209ENST00000489861 MRPL52Q86TS9 123 aaKnown RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 CHCHD10Q8WYQ3 142 aaPredicted RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 RPL39LQ96EH5 51 aaKnown RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 MRPL18Q9H0U6 180 aaKnown RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 CSDC2Q9Y534 153 aaKnown RBP4.49□□□□□ -1.69
COL9A1-209ENST00000489861 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.48□□□□□ -1.69
COL9A1-209ENST00000489861 IGKV2-29A2NJV5 120 aaPredicted RBP4.48□□□□□ -1.69
COL9A1-209ENST00000489861 C1orf196B1AJZ1 125 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 PPBPP02775 128 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 MALP21145 153 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 RAB14P61106 215 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 SUMO2P61956 95 aaKnown RBP4.48□□□□□ -1.69
COL9A1-209ENST00000489861 ADIRFQ15847 76 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 STPG4Q8N801 248 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 CARD19Q96LW7 228 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 C20orf78Q9BR46 151 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 V9GYV3 84 aa4.48□□□□□ -1.69
COL9A1-209ENST00000489861 IGKV2-24A0A0C4DH68 120 aa4.47□□□□□ -1.69
COL9A1-209ENST00000489861 LINC00959A0A1B0GUT2 108 aa4.47□□□□□ -1.69
COL9A1-209ENST00000489861 SMIM27A0A1W2PRY6 76 aa4.47□□□□□ -1.69
COL9A1-209ENST00000489861 F8WDY8 70 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms