RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 GAGE12HA6NDE8 117 aa10.29□□□□□ -0.76
LMX1A-204ENST00000489443 PRSS1P07477 247 aa10.29□□□□□ -0.76
LMX1A-204ENST00000489443 XGP55808 180 aa10.29□□□□□ -0.76
LMX1A-204ENST00000489443 KRTAP17-1Q9BYP8 105 aa10.29□□□□□ -0.76
LMX1A-204ENST00000489443 TCAPO15273 167 aa10.28□□□□□ -0.76
LMX1A-204ENST00000489443 SMAGPQ0VAQ4 97 aa10.28□□□□□ -0.76
LMX1A-204ENST00000489443 C10orf91Q5T1B1 145 aa10.28□□□□□ -0.76
LMX1A-204ENST00000489443 ZNF664Q8N3J9 261 aa10.28□□□□□ -0.76
LMX1A-204ENST00000489443 CHCHD10Q8WYQ3 142 aaPredicted RBP10.28□□□□□ -0.76
LMX1A-204ENST00000489443 CDC42SE2Q9NRR3 84 aa10.28□□□□□ -0.76
LMX1A-204ENST00000489443 HAMPP81172 84 aa10.27□□□□□ -0.77
LMX1A-204ENST00000489443 TMEM18Q96B42 140 aa10.27□□□□□ -0.77
LMX1A-204ENST00000489443 FAM30AQ9NZY2 134 aa10.27□□□□□ -0.77
LMX1A-204ENST00000489443 CARHSP1Q9Y2V2 147 aaKnown RBP10.27□□□□□ -0.77
LMX1A-204ENST00000489443 LOC389332A0A1B0GUA5 103 aa10.26□□□□□ -0.77
LMX1A-204ENST00000489443 LINC00959A0A1B0GUT2 108 aa10.26□□□□□ -0.77
LMX1A-204ENST00000489443 S100PP25815 95 aa10.26□□□□□ -0.77
LMX1A-204ENST00000489443 CLRN3Q8NCR9 226 aa10.26□□□□□ -0.77
LMX1A-204ENST00000489443 UBE2D4Q9Y2X8 147 aa10.26□□□□□ -0.77
LMX1A-204ENST00000489443 TRAV9-1A0A075B6T8 112 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 hDV102S1A0JD36 115 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 RAB5AP20339 215 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 XCL1P47992 114 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 RPL39P62891 51 aaKnown RBP10.25□□□□□ -0.77
LMX1A-204ENST00000489443 RNASE13Q5GAN3 156 aaKnown RBP10.25□□□□□ -0.77
LMX1A-204ENST00000489443 Q8N1X5 172 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 KRTAP4-5Q9BYR2 181 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 MAP1LC3AQ9H492 121 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 RPS10P5Q9NQ39 176 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 LAMTOR2Q9Y2Q5 125 aa10.25□□□□□ -0.77
LMX1A-204ENST00000489443 CCL25O15444 150 aa10.24□□□□□ -0.77
LMX1A-204ENST00000489443 RHEBQ15382 184 aa10.24□□□□□ -0.77
LMX1A-204ENST00000489443 SS18Q15532 418 aa10.24□□□□□ -0.77
LMX1A-204ENST00000489443 CSDC2Q9Y534 153 aaKnown RBP10.24□□□□□ -0.77
LMX1A-204ENST00000489443 APOC3P02656 99 aa10.23□□□□□ -0.77
LMX1A-204ENST00000489443 CFAP161Q6P656 301 aa10.23□□□□□ -0.77
LMX1A-204ENST00000489443 TIMM21Q9BVV7 248 aa10.23□□□□□ -0.77
LMX1A-204ENST00000489443 PCLOQ9Y6V0 5065 aa10.23□□□□□ -0.77
LMX1A-204ENST00000489443 PRSS47A8MTI9 375 aa10.22□□□□□ -0.77
LMX1A-204ENST00000489443 SMR3BP02814 79 aaPredicted RBP10.22□□□□□ -0.77
LMX1A-204ENST00000489443 FOXI1Q12951 378 aa10.22□□□□□ -0.77
LMX1A-204ENST00000489443 KIAA1644Q3SXP7 199 aa10.22□□□□□ -0.77
LMX1A-204ENST00000489443 Q6ZUT4 128 aa10.22□□□□□ -0.77
LMX1A-204ENST00000489443 AP5S1Q9NUS5 200 aa10.22□□□□□ -0.77
LMX1A-204ENST00000489443 SRRM2Q9UQ35 2752 aaKnown RBP10.21□□□□□ -0.77
LMX1A-204ENST00000489443 Q8N8P6 123 aa10.21□□□□□ -0.77
LMX1A-204ENST00000489443 C15orf56Q8N910 161 aa10.21□□□□□ -0.77
LMX1A-204ENST00000489443 DNAH8Q96JB1 4490 aa10.21□□□□□ -0.78
LMX1A-204ENST00000489443 TRAV13-1A0A0B4J241 112 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 C1orf196B1AJZ1 125 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 NDUFA5Q16718 116 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 HIGD2BQ4VC39 106 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 Q6ZSA8 131 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 C9orf163Q8N9P6 203 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 OPRPNQ99935 248 aaPredicted RBP10.2□□□□□ -0.78
LMX1A-204ENST00000489443 SPANXA1Q9NS26 97 aa10.2□□□□□ -0.78
LMX1A-204ENST00000489443 CD164L2Q6UWJ8 174 aa10.19□□□□□ -0.78
LMX1A-204ENST00000489443 GNB1LQ9BYB4 327 aa10.19□□□□□ -0.78
LMX1A-204ENST00000489443 ABCA13Q86UQ4 5058 aa10.19□□□□□ -0.78
LMX1A-204ENST00000489443 SLPIP03973 132 aa10.18□□□□□ -0.78
LMX1A-204ENST00000489443 CNBPP62633 177 aaKnown RBP10.18□□□□□ -0.78
LMX1A-204ENST00000489443 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.17□□□□□ -0.78
LMX1A-204ENST00000489443 EPM2AB3EWF7 344 aa10.17□□□□□ -0.78
LMX1A-204ENST00000489443 SNAPINO95295 136 aa10.17□□□□□ -0.78
LMX1A-204ENST00000489443 IFI27P40305 119 aaPredicted RBP10.17□□□□□ -0.78
LMX1A-204ENST00000489443 SVBPQ8N300 66 aa10.17□□□□□ -0.78
LMX1A-204ENST00000489443 FAM104AQ969W3 186 aa10.17□□□□□ -0.78
LMX1A-204ENST00000489443 NXT2Q9NPJ8 142 aaKnown RBP10.17□□□□□ -0.78
LMX1A-204ENST00000489443 MRPS36P82909 103 aaKnown RBP10.16□□□□□ -0.78
LMX1A-204ENST00000489443 FABP9Q0Z7S8 132 aa10.16□□□□□ -0.78
LMX1A-204ENST00000489443 COX19Q49B96 90 aa10.16□□□□□ -0.78
LMX1A-204ENST00000489443 ORMDL2Q53FV1 153 aa10.16□□□□□ -0.78
LMX1A-204ENST00000489443 CHAC1Q9BUX1 264 aa10.16□□□□□ -0.78
LMX1A-204ENST00000489443 GVQW2A0A096LPI5 108 aaPredicted RBP10.15□□□□□ -0.78
LMX1A-204ENST00000489443 IGHV1-58A0A0C4DH39 117 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 IFITM10A6NMD0 228 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 COX7A2LO14548 114 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 Q5VSD8 79 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 SCXQ7RTU7 201 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 LINC00526Q96FQ7 95 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 MRPL18Q9H0U6 180 aaKnown RBP10.15□□□□□ -0.78
LMX1A-204ENST00000489443 CYSLTR1Q9Y271 337 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 PYGO1Q9Y3Y4 419 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 FAT1Q14517 4588 aa10.15□□□□□ -0.78
LMX1A-204ENST00000489443 IGHV3-64A0A075B6Q5 118 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 TGIF2-C20orf24A0A0A6YYL0 155 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 FAM229AH3BQW9 127 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 MT-ND6P03923 174 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 MALP21145 153 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 C2orf66Q6UXQ4 117 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 SDIM1Q6ZPB5 146 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 PRSS3P2Q8NHM4 247 aa10.14□□□□□ -0.79
LMX1A-204ENST00000489443 ALKBH7Q9BT30 221 aaPredicted RBP10.14□□□□□ -0.79
LMX1A-204ENST00000489443 IGLV4-3A0A075B6K6 122 aa10.13□□□□□ -0.79
LMX1A-204ENST00000489443 K7EMI3 77 aa10.13□□□□□ -0.79
LMX1A-204ENST00000489443 C5orf38Q86SI9 138 aa10.13□□□□□ -0.79
LMX1A-204ENST00000489443 VPS13BQ7Z7G8 4022 aa10.12□□□□□ -0.79
LMX1A-204ENST00000489443 ZNF561-AS1K7EIQ3 104 aa10.12□□□□□ -0.79
LMX1A-204ENST00000489443 CIRBP-AS1Q8TBR5 109 aa10.12□□□□□ -0.79
LMX1A-204ENST00000489443 TMEM141Q96I45 108 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms