RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	ZNF236	Q9UL36	1845 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	SYNE2	Q8WXH0	6885 aa	Known RBP	0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896		F6UZH7	168 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	SFT2D2	O95562	160 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	TRAPPC2	P0DI81	140 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	TRAPPC2B	P0DI82	140 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	SNCA	P37840	140 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	BTG2	P78543	158 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	SARNP	P82979	210 aa	Known RBP	0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	PIGY	Q3MUY2	71 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	FXYD6	Q9H0Q3	95 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	UQCR10	Q9UDW1	63 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	ARL2-SNX15	V9GYD0	113 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	BICRA	Q9NZM4	1560 aa		0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	KTN1	Q86UP2	1357 aa	Known RBP	0.06	□□□□□ -2.4
PTPN4-212	ENST00000488896	LRRC37A3	O60309	1634 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	TRBV6-1	A0A0K0K1D8	114 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	DLEU1	O43261	78 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	SPRR1A	P35321	89 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	PPP3R1	P63098	170 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	UBE2L3	P68036	154 aa	Known RBP	0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	DPH3P1	Q9H4G8	78 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	NXT2	Q9NPJ8	142 aa	Known RBP	0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	PSME4	Q14997	1843 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	PATJ	Q8NI35	1801 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	C2CD3	Q4AC94	2353 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	MYO7B	Q6PIF6	2116 aa		0.05	□□□□□ -2.4
PTPN4-212	ENST00000488896	CPSF1	Q10570	1443 aa	Known RBP	0.04	□□□□□ -2.4
PTPN4-212	ENST00000488896	UBE2L5P	A0A1B0GUS4	154 aa		0.04	□□□□□ -2.4
PTPN4-212	ENST00000488896	EFCAB10	A6NFE3	127 aa		0.04	□□□□□ -2.4
PTPN4-212	ENST00000488896	IGLC1	P0CG04	106 aa		0.04	□□□□□ -2.4
PTPN4-212	ENST00000488896	PRDM2	Q13029	1718 aa		0.04	□□□□□ -2.4
PTPN4-212	ENST00000488896	FOCAD	Q5VW36	1801 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	NCOR1	O75376	2440 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	CORT	O00230	105 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	MGP	P08493	103 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	GNG4	P50150	75 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	MRPS10	P82664	201 aa	Known RBP	0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	GTF2H5	Q6ZYL4	71 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	AMELX	Q99217	191 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	LINC00472	Q9H8W2	130 aa		0.03	□□□□□ -2.4
PTPN4-212	ENST00000488896	MYOM3	Q5VTT5	1437 aa		0.03	□□□□□ -2.41
PTPN4-212	ENST00000488896	POLA1	P09884	1462 aa	Predicted RBP	0.03	□□□□□ -2.41
PTPN4-212	ENST00000488896	PIEZO1	Q92508	2521 aa		0.03	□□□□□ -2.41
PTPN4-212	ENST00000488896	FAM208B	Q5VWN6	2430 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896		A0A1B0GWA3	101 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	LOC730098	B7Z3J9	87 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896		Q0VG73	95 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	WHAMMP3	Q1A5X7	153 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	FAM223A	Q8IWN6	122 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	C12orf57	Q99622	126 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	C10orf71	Q711Q0	1435 aa		0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	POLQ	O75417	2590 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	SIPA1L3	O60292	1781 aa	Predicted RBP	0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	TCHH	Q07283	1943 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	NAP1L6	A6NFF2	107 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	CRYM-AS1	A6NIL9	109 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	SYS1-DBNDD2	H3BUS1	97 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	COX6B1	P14854	86 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896		Q5VSD8	79 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	C10orf113	Q5VZT2	155 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	TMEM263	Q8WUH6	116 aa	Known RBP	0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	TMEM203	Q969S6	136 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	IER3IP1	Q9Y5U9	82 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	IGSF10	Q6WRI0	2623 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	MBD5	Q9P267	1494 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	SHANK2	Q9UPX8	1470 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	LRP6	O75581	1613 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	NHSL1	Q5SYE7	1610 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	PHLPP1	O60346	1717 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	KDM3B	Q7LBC6	1761 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	ABCA2	Q9BZC7	2435 aa		0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	FSIP2	Q5CZC0	6907 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	LINC00587	B1AMM8	73 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896		I3L2K1	104 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896		K7EQZ3	153 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	SPRR1B	P22528	89 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	ATP5E	P56381	51 aa	Predicted RBP	0	□□□□□ -2.41
PTPN4-212	ENST00000488896	SPTBN1	Q01082	2364 aa	Known RBP	0	□□□□□ -2.41
PTPN4-212	ENST00000488896	CSPG4	Q6UVK1	2322 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	OTOG	Q6ZRI0	2925 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	SBF2	Q86WG5	1849 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	VAMP8	Q9BV40	100 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	CELSR2	Q9HCU4	2923 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	PRO1854	Q9UHT4	67 aa		0	□□□□□ -2.41
PTPN4-212	ENST00000488896	BTAF1	O14981	1849 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	HRNR	Q86YZ3	2850 aa	Predicted RBP	-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	C20orf202	A1L168	122 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	FAM223B	A6NKX1	122 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	COX6C	P09669	75 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	KRTDAP	P60985	99 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	SEC11A	P67812	179 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	KLK9	Q2XQG4	91 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	LCN9	Q8WX39	176 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	C2orf88	Q9BSF0	95 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	PRO1933	Q9H354	126 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	CDC42SE2	Q9NRR3	84 aa		-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	UBR5	O95071	2799 aa	Predicted RBP	-0.01	□□□□□ -2.41
PTPN4-212	ENST00000488896	KDM5A	P29375	1690 aa	Known RBP	-0.02	□□□□□ -2.41
PTPN4-212	ENST00000488896	KIF21A	Q7Z4S6	1674 aa		-0.02	□□□□□ -2.41

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms