RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 DNAH8Q96JB1 4490 aa8.96□□□□□ -0.97
SYNE1-226ENST00000488376 LINC00959A0A1B0GUT2 108 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 F8W036 122 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 PPP1R17O96001 155 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 MT-ND4LP03901 98 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 S100A8P05109 93 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 XCL1P47992 114 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 HIGD2BQ4VC39 106 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 ATP5L2Q7Z4Y8 100 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 CIRBP-AS1Q8TBR5 109 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 TMEM101Q96IK0 257 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 C20orf78Q9BR46 151 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 UBE2D4Q9Y2X8 147 aa8.96□□□□□ -0.98
SYNE1-226ENST00000488376 TMEM218A2RU14 115 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 CCL25O15444 150 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 RPL39P62891 51 aaKnown RBP8.95□□□□□ -0.98
SYNE1-226ENST00000488376 DGAT2L7PQ6IED9 249 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 ZNF664Q8N3J9 261 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 C9orf163Q8N9P6 203 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 FAM104AQ969W3 186 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 ANAPC16Q96DE5 110 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 BTF3L4Q96K17 158 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 KIR2DL4Q99706 377 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 CHAC1Q9BUX1 264 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 SMIM2Q9BVW6 85 aa8.95□□□□□ -0.98
SYNE1-226ENST00000488376 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-226ENST00000488376 TCAPO15273 167 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 CNBPP62633 177 aaKnown RBP8.94□□□□□ -0.98
SYNE1-226ENST00000488376 RPL32P62910 135 aaKnown RBP8.94□□□□□ -0.98
SYNE1-226ENST00000488376 UQCC3Q6UW78 93 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 Q6ZUT4 128 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 COMMD7Q86VX2 200 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 LINC00528Q8N1L1 170 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 CLRN3Q8NCR9 226 aa8.94□□□□□ -0.98
SYNE1-226ENST00000488376 INAFM2P0DMQ5 153 aa8.93□□□□□ -0.98
SYNE1-226ENST00000488376 SDIM1Q6ZPB5 146 aa8.93□□□□□ -0.98
SYNE1-226ENST00000488376 TMEM136Q6ZRR5 245 aa8.93□□□□□ -0.98
SYNE1-226ENST00000488376 ORMDL3Q8N138 153 aa8.93□□□□□ -0.98
SYNE1-226ENST00000488376 PRELID3AQ96N28 172 aa8.93□□□□□ -0.98
SYNE1-226ENST00000488376 FAM229AH3BQW9 127 aa8.92□□□□□ -0.98
SYNE1-226ENST00000488376 LINC00526Q96FQ7 95 aa8.92□□□□□ -0.98
SYNE1-226ENST00000488376 OPRPNQ99935 248 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-226ENST00000488376 SRRM2Q9UQ35 2752 aaKnown RBP8.92□□□□□ -0.98
SYNE1-226ENST00000488376 PPBPP02775 128 aa8.91□□□□□ -0.98
SYNE1-226ENST00000488376 CSDC2Q9Y534 153 aaKnown RBP8.91□□□□□ -0.98
SYNE1-226ENST00000488376 VPS13BQ7Z7G8 4022 aa8.9□□□□□ -0.98
SYNE1-226ENST00000488376 GVQW2A0A096LPI5 108 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-226ENST00000488376 TRAV13-1A0A0B4J241 112 aa8.9□□□□□ -0.98
SYNE1-226ENST00000488376 LOC389332A0A1B0GUA5 103 aa8.9□□□□□ -0.98
SYNE1-226ENST00000488376 PHOX2AO14813 284 aa8.9□□□□□ -0.98
SYNE1-226ENST00000488376 CHTF8P0CG12 524 aa8.9□□□□□ -0.98
SYNE1-226ENST00000488376 KRTAP10-4P60372 401 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-226ENST00000488376 SS18Q15532 418 aa8.89□□□□□ -0.99
SYNE1-226ENST00000488376 CFAP161Q6P656 301 aa8.89□□□□□ -0.99
SYNE1-226ENST00000488376 TIMM21Q9BVV7 248 aa8.89□□□□□ -0.99
SYNE1-226ENST00000488376 SEC11CQ9BY50 192 aa8.89□□□□□ -0.99
SYNE1-226ENST00000488376 AP5S1Q9NUS5 200 aa8.89□□□□□ -0.99
SYNE1-226ENST00000488376 CD164L2Q6UWJ8 174 aa8.88□□□□□ -0.99
SYNE1-226ENST00000488376 IGHV3-64A0A075B6Q5 118 aa8.87□□□□□ -0.99
SYNE1-226ENST00000488376 IMMP2LQ96T52 175 aa8.87□□□□□ -0.99
SYNE1-226ENST00000488376 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-226ENST00000488376 PRSS47A8MTI9 375 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 CIRBPQ14011 172 aaKnown RBP8.86□□□□□ -0.99
SYNE1-226ENST00000488376 KIAA1644Q3SXP7 199 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 C10orf91Q5T1B1 145 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 PRSS3P2Q8NHM4 247 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 TMEM18Q96B42 140 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 CTDSP1Q9GZU7 261 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 SPANXA1Q9NS26 97 aa8.86□□□□□ -0.99
SYNE1-226ENST00000488376 IGHV1-58A0A0C4DH39 117 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 C1orf196B1AJZ1 125 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 COX6A2Q02221 97 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 C5orf38Q86SI9 138 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 MAP1LC3AQ9H492 121 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 LAMTOR2Q9Y2Q5 125 aa8.85□□□□□ -0.99
SYNE1-226ENST00000488376 COX7A2LO14548 114 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 PLA2G1BP04054 148 aaKnown RBP8.84□□□□□ -0.99
SYNE1-226ENST00000488376 RAB5AP20339 215 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 MRPS36P82909 103 aaKnown RBP8.84□□□□□ -0.99
SYNE1-226ENST00000488376 SMAGPQ0VAQ4 97 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 ZC2HC1BQ5TFG8 222 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 Q8N8P6 123 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 SPACA4Q8TDM5 124 aa8.84□□□□□ -0.99
SYNE1-226ENST00000488376 CARHSP1Q9Y2V2 147 aaKnown RBP8.84□□□□□ -0.99
SYNE1-226ENST00000488376 IGLV4-69A0A075B6H9 119 aa8.83□□□□□ -1
SYNE1-226ENST00000488376 IGLV4-3A0A075B6K6 122 aa8.83□□□□□ -1
SYNE1-226ENST00000488376 A0A087WYN8 130 aa8.82□□□□□ -1
SYNE1-226ENST00000488376 A0A096LNI7 61 aa8.82□□□□□ -1
SYNE1-226ENST00000488376 IGKV2-24A0A0C4DH68 120 aa8.82□□□□□ -1
SYNE1-226ENST00000488376 IFITM10A6NMD0 228 aa8.82□□□□□ -1
SYNE1-226ENST00000488376 MALP21145 153 aa8.82□□□□□ -1
SYNE1-226ENST00000488376 IFI27P40305 119 aaPredicted RBP8.82□□□□□ -1
SYNE1-226ENST00000488376 FLG2Q5D862 2391 aaPredicted RBP8.81□□□□□ -1
SYNE1-226ENST00000488376 MYCBP2O75592 4640 aa8.81□□□□□ -1
SYNE1-226ENST00000488376 TRAV9-1A0A075B6T8 112 aa8.81□□□□□ -1
SYNE1-226ENST00000488376 HNRNPA3P51991 378 aaKnown RBP8.81□□□□□ -1
SYNE1-226ENST00000488376 C2orf66Q6UXQ4 117 aa8.81□□□□□ -1
SYNE1-226ENST00000488376 Q6ZRU5 148 aa8.81□□□□□ -1
SYNE1-226ENST00000488376 CARD19Q96LW7 228 aa8.81□□□□□ -1
SYNE1-226ENST00000488376 RPS10P5Q9NQ39 176 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms