RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 APOMO95445 188 aa9.23□□□□□ -0.93
MCF2L-228ENST00000487354 GNG4P50150 75 aa9.23□□□□□ -0.93
MCF2L-228ENST00000487354 MANBALQ9NQG1 85 aa9.23□□□□□ -0.93
MCF2L-228ENST00000487354 GNG13Q9P2W3 67 aa9.23□□□□□ -0.93
MCF2L-228ENST00000487354 ZNF345Q14585 488 aa9.22□□□□□ -0.93
MCF2L-228ENST00000487354 MRPL52Q86TS9 123 aaKnown RBP9.22□□□□□ -0.93
MCF2L-228ENST00000487354 NUDT10Q8NFP7 164 aa9.22□□□□□ -0.93
MCF2L-228ENST00000487354 DIRC1Q969H9 104 aa9.22□□□□□ -0.93
MCF2L-228ENST00000487354 NUDT11Q96G61 164 aa9.22□□□□□ -0.93
MCF2L-228ENST00000487354 TRBV6-5A0A0K0K1A5 114 aa9.21□□□□□ -0.94
MCF2L-228ENST00000487354 I3L3M4 83 aa9.21□□□□□ -0.94
MCF2L-228ENST00000487354 SS18Q15532 418 aa9.21□□□□□ -0.94
MCF2L-228ENST00000487354 ISOC2Q96AB3 205 aa9.21□□□□□ -0.94
MCF2L-228ENST00000487354 TMEM242Q9NWH2 141 aa9.21□□□□□ -0.94
MCF2L-228ENST00000487354 IGLV1-50A0A075B6I6 118 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 BCL2L11O43521 198 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 PRR4Q16378 134 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 TMEM101Q96IK0 257 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 BTF3L4Q96K17 158 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 CAMK2N2Q96S95 79 aa9.2□□□□□ -0.94
MCF2L-228ENST00000487354 RNASE7Q9H1E1 156 aaKnown RBP9.2□□□□□ -0.94
MCF2L-228ENST00000487354 TRAV1-1A0A0B4J248 108 aa9.19□□□□□ -0.94
MCF2L-228ENST00000487354 A0A0U1RQV1 116 aa9.19□□□□□ -0.94
MCF2L-228ENST00000487354 FAM168BA1KXE4 195 aa9.19□□□□□ -0.94
MCF2L-228ENST00000487354 K7EN84 100 aa9.19□□□□□ -0.94
MCF2L-228ENST00000487354 RPL18AQ02543 176 aaKnown RBP9.19□□□□□ -0.94
MCF2L-228ENST00000487354 OPRPNQ99935 248 aaPredicted RBP9.19□□□□□ -0.94
MCF2L-228ENST00000487354 RPP21Q9H633 154 aaKnown RBP9.19□□□□□ -0.94
MCF2L-228ENST00000487354 EIF5AP63241 154 aaKnown RBP9.18□□□□□ -0.94
MCF2L-228ENST00000487354 EIF5AL1Q6IS14 154 aaKnown RBP9.18□□□□□ -0.94
MCF2L-228ENST00000487354 KRTAP7-1Q8IUC3 87 aa9.18□□□□□ -0.94
MCF2L-228ENST00000487354 MRAP2Q96G30 205 aa9.18□□□□□ -0.94
MCF2L-228ENST00000487354 C2orf48Q96LS8 159 aa9.18□□□□□ -0.94
MCF2L-228ENST00000487354 MUC17Q685J3 4493 aa9.18□□□□□ -0.94
MCF2L-228ENST00000487354 COX7A2LO14548 114 aa9.17□□□□□ -0.94
MCF2L-228ENST00000487354 PMCHP20382 165 aa9.17□□□□□ -0.94
MCF2L-228ENST00000487354 TEX261Q6UWH6 196 aa9.17□□□□□ -0.94
MCF2L-228ENST00000487354 POLR2KP53803 58 aaKnown RBP9.16□□□□□ -0.94
MCF2L-228ENST00000487354 MALP21145 153 aa9.15□□□□□ -0.94
MCF2L-228ENST00000487354 RNF151Q2KHN1 245 aa9.15□□□□□ -0.94
MCF2L-228ENST00000487354 RNASE13Q5GAN3 156 aaKnown RBP9.15□□□□□ -0.94
MCF2L-228ENST00000487354 BIN3Q9NQY0 253 aa9.15□□□□□ -0.94
MCF2L-228ENST00000487354 A0A087WZ39 114 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 TRBV27A0A0K0K1C4 114 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 C7orf77A4D0Y5 90 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 C1orf196B1AJZ1 125 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 PDE6DO43924 150 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 C5orf38Q86SI9 138 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 MED9Q9NWA0 146 aa9.14□□□□□ -0.95
MCF2L-228ENST00000487354 HMSDA8MTL9 139 aa9.13□□□□□ -0.95
MCF2L-228ENST00000487354 SPAG11BQ08648 103 aa9.13□□□□□ -0.95
MCF2L-228ENST00000487354 OCC1Q8TAD7 63 aa9.13□□□□□ -0.95
MCF2L-228ENST00000487354 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
MCF2L-228ENST00000487354 UBE2D4Q9Y2X8 147 aa9.13□□□□□ -0.95
MCF2L-228ENST00000487354 C10orf25Q5T742 122 aa9.12□□□□□ -0.95
MCF2L-228ENST00000487354 MRPL35Q9NZE8 188 aaKnown RBP9.12□□□□□ -0.95
MCF2L-228ENST00000487354 CSDC2Q9Y534 153 aaKnown RBP9.12□□□□□ -0.95
MCF2L-228ENST00000487354 TRAV13-1A0A0B4J241 112 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 KANTRA0A1W2PQU2 76 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 Q6ZUT4 128 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 SMIM15Q7Z3B0 74 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 FAM19A5Q7Z5A7 132 aaPredicted RBP9.11□□□□□ -0.95
MCF2L-228ENST00000487354 FAM104AQ969W3 186 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 FAM210AQ96ND0 272 aa9.11□□□□□ -0.95
MCF2L-228ENST00000487354 TLX1NBP0CAT3 122 aa9.1□□□□□ -0.95
MCF2L-228ENST00000487354 RPL13AP40429 203 aaKnown RBP9.09□□□□□ -0.95
MCF2L-228ENST00000487354 UBE2D1P51668 147 aa9.09□□□□□ -0.95
MCF2L-228ENST00000487354 OR10D4PQ8NGN7 298 aa9.09□□□□□ -0.95
MCF2L-228ENST00000487354 C6orf48Q9UBA6 75 aa9.09□□□□□ -0.95
MCF2L-228ENST00000487354 TSKUQ8WUA8 353 aa9.08□□□□□ -0.96
MCF2L-228ENST00000487354 SMKR1H3BMG3 65 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 RAB4AP20338 218 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 NRACQ8N912 160 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 ORAOV1Q8WV07 137 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 TMEM191AQ9H0A3 160 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 SMDT1Q9H4I9 107 aa9.07□□□□□ -0.96
MCF2L-228ENST00000487354 CARHSP1Q9Y2V2 147 aaKnown RBP9.07□□□□□ -0.96
MCF2L-228ENST00000487354 IGHV3OR16-9A0A0B4J2B5 98 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 M0QXV9 152 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 UNQ6190/PRO20217Q6UXQ8 127 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 FAM231DQ6ZW35 169 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 AMN1Q8IY45 258 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 IMMP2LQ96T52 175 aa9.06□□□□□ -0.96
MCF2L-228ENST00000487354 GATCO43716 136 aaKnown RBP9.05□□□□□ -0.96
MCF2L-228ENST00000487354 A8MWL6 223 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 F8WDY8 70 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 NDUFA1O15239 70 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 TSPAN13O95857 204 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 GAGE2EQ4V326 116 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 CT83Q5H943 113 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 TIMM21Q9BVV7 248 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 GAGE2DQ9UEU5 116 aa9.04□□□□□ -0.96
MCF2L-228ENST00000487354 A0A087X002 238 aa9.03□□□□□ -0.96
MCF2L-228ENST00000487354 TEX46H3BTG2 121 aa9.03□□□□□ -0.96
MCF2L-228ENST00000487354 VCYO14598 125 aa9.03□□□□□ -0.96
MCF2L-228ENST00000487354 FCER1GP30273 86 aa9.03□□□□□ -0.96
MCF2L-228ENST00000487354 KIAA0087Q14695 138 aa9.03□□□□□ -0.96
MCF2L-228ENST00000487354 C9orf129Q5T035 196 aaKnown RBP9.03□□□□□ -0.96
MCF2L-228ENST00000487354 SUMO2P61956 95 aaKnown RBP9.02□□□□□ -0.97
MCF2L-228ENST00000487354 UBE2BP63146 152 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms