RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TMEM235A6NFC5 223 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 ZNF736B4DX44 427 aaPredicted RBP1.56□□□□□ -2.16
VPS41-213ENST00000485955 G3V3Q6 166 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 MT-ATP8P03928 68 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 CLPSP04118 112 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 IL7P13232 177 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 CKS2P33552 79 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 ETV6P41212 452 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 Q0VG73 95 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 FOXF1Q12946 379 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 FAM74A1Q5RGS3 127 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 FAM27BQ5VT28 67 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 ATP6V0E2Q8NHE4 81 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 VSTM2AQ8TAG5 236 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 POP5Q969H6 163 aaKnown RBP1.56□□□□□ -2.16
VPS41-213ENST00000485955 DSCR8Q96T75 97 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 ASF1BQ9NVP2 202 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 MED9Q9NWA0 146 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 NHP2Q9NX24 153 aaKnown RBP1.56□□□□□ -2.16
VPS41-213ENST00000485955 TIMM9Q9Y5J7 89 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 COL7A1Q02388 2944 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 DSCAMO60469 2012 aa1.56□□□□□ -2.16
VPS41-213ENST00000485955 TRBV10-2A0A0K0K1G8 114 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 hDV103S1A0JD37 113 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 FAM24AA6NFZ4 105 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 C17orf112F2Z3M2 114 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 H3BPC8 53 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 J3QLW9 94 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 GNRH2O43555 120 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 SNCGO76070 127 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 IGHV3-53P01767 116 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 DEFA4P12838 97 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 ZNF22P17026 224 aaPredicted RBP1.55□□□□□ -2.16
VPS41-213ENST00000485955 PEBP1P30086 187 aaKnown RBP1.55□□□□□ -2.16
VPS41-213ENST00000485955 FXYD2P54710 66 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 ESRGQ1W209 222 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 SPRNQ5BIV9 151 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 C12orf73Q69YU5 71 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 OR2T2Q6IF00 324 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 LYZL1Q6UWQ5 148 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 Q6ZS52 159 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 FP248Q71RG6 208 aaPredicted RBP1.55□□□□□ -2.16
VPS41-213ENST00000485955 Q8N814 137 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 C10orf105Q8TEF2 133 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 PSMF1Q92530 271 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 HYLS1Q96M11 299 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 NABP2Q9BQ15 211 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 ATG5Q9H1Y0 275 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 BET1LQ9NYM9 111 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 ABCA4P78363 2273 aa1.55□□□□□ -2.16
VPS41-213ENST00000485955 ZGRF1Q86YA3 2104 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 CNTRLQ7Z7A1 2325 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 IGKV2D-26A0A0A0MRZ7 120 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 TRAV3A0A0B4J244 114 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 MUC21A0A0G2JKD1 596 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 RBAKDNA6NC62 111 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 C11orf86A6NJI1 115 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 B4DSR2 109 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 E7EQL1 145 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 CPSF4O95639 269 aaKnown RBP1.54□□□□□ -2.16
VPS41-213ENST00000485955 IGLV1-51P01701 117 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 IL5P05113 134 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 ATP5EP56381 51 aaPredicted RBP1.54□□□□□ -2.16
VPS41-213ENST00000485955 IQCJQ1A5X6 159 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 ATP11AUNQ6ZP68 121 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 Q8IYB0 196 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 Q8NAQ8 132 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 ST20-AS1Q8NBB2 130 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 LINC00301Q8NCQ3 95 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 OR2T35Q8NGX2 323 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 SPTSSAQ969W0 71 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 TVP23CQ96ET8 276 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 SMR3AQ99954 134 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 CST11Q9H112 138 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 TMEM242Q9NWH2 141 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 FAM215AQ9Y5M1 114 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 LY96Q9Y6Y9 160 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 MYH1P12882 1939 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 ZNF638Q14966 1978 aaKnown RBP1.54□□□□□ -2.16
VPS41-213ENST00000485955 POLEQ07864 2286 aa1.54□□□□□ -2.16
VPS41-213ENST00000485955 TRAV14DV4A0A0A6YYC5 116 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 IGHV1-24A0A0C4DH33 117 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 A0A1B0GU33 70 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 A0A1W2PNN7 141 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 H7C2G1 150 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 K7EP34 96 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 M0R233 179 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 SSSCA1O60232 199 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 MRPS14O60783 128 aaKnown RBP1.53□□□□□ -2.16
VPS41-213ENST00000485955 NDUFB6O95139 128 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 TRAPPC2P0DI81 140 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 TRAPPC2BP0DI82 140 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 COX7CP15954 63 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 RP1P56715 2156 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 ROMO1P60602 79 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 KMT2AQ03164 3969 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 PEA15Q15121 130 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 NNATQ16517 81 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 LGALSLQ3ZCW2 172 aaPredicted RBP1.53□□□□□ -2.16
VPS41-213ENST00000485955 Q6ZQT0 140 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms