RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PACRGQ96M98 296 aaPredicted RBP4.6□□□□□ -1.67
USP48-208ENST00000479177 HIST1H2BLQ99880 126 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 CHCHD7Q9BUK0 85 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 FABP4P15090 132 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 S100A2P29034 98 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 MRPL23Q16540 153 aaKnown RBP4.59□□□□□ -1.67
USP48-208ENST00000479177 CSMD3Q7Z407 3707 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 SH2D6Q7Z4S9 175 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 C20orf203Q8NBC4 194 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 TMEM18Q96B42 140 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 GTSF1LQ9H1H1 148 aa4.59□□□□□ -1.67
USP48-208ENST00000479177 TRBV6-8A0A0A6YYG3 113 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 LOC105371267A0A1B0GV96 52 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 RPL39P62891 51 aaKnown RBP4.58□□□□□ -1.68
USP48-208ENST00000479177 TMEM97Q5BJF2 176 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 C2orf66Q6UXQ4 117 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 LINC00173Q6ZV60 143 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 C15orf53Q8NAA6 179 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 TOMM6Q96B49 74 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 TMEM243Q9BU79 118 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 CYSLTR1Q9Y271 337 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 STARD9Q9P2P6 4700 aa4.58□□□□□ -1.68
USP48-208ENST00000479177 PLECQ15149 4684 aaKnown RBP4.57□□□□□ -1.68
USP48-208ENST00000479177 TRBV25-1A0A075B6N4 114 aa4.57□□□□□ -1.68
USP48-208ENST00000479177 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.57□□□□□ -1.68
USP48-208ENST00000479177 IGKV2-29A2NJV5 120 aaPredicted RBP4.57□□□□□ -1.68
USP48-208ENST00000479177 LINC01549A6NIU2 74 aa4.57□□□□□ -1.68
USP48-208ENST00000479177 LEPROTL1O95214 131 aa4.57□□□□□ -1.68
USP48-208ENST00000479177 G0S2P27469 103 aa4.57□□□□□ -1.68
USP48-208ENST00000479177 HSPB8Q9UJY1 196 aa4.57□□□□□ -1.68
USP48-208ENST00000479177 NUPR2A6NF83 97 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 IGIPA6NJ69 53 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 ATP5LO75964 103 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 LELP1Q5T871 98 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 CEMP1Q6PRD7 247 aaPredicted RBP4.56□□□□□ -1.68
USP48-208ENST00000479177 ERASQ7Z444 233 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 MRPL52Q86TS9 123 aaKnown RBP4.56□□□□□ -1.68
USP48-208ENST00000479177 OR10D4PQ8NGN7 298 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 IFI27L1Q96BM0 104 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 SCGB3A1Q96QR1 104 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 TIMM17AQ99595 171 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 TIMM21Q9BVV7 248 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 SPANXA1Q9NS26 97 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 UBE2D4Q9Y2X8 147 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 VPS13DQ5THJ4 4388 aa4.56□□□□□ -1.68
USP48-208ENST00000479177 IGLV4-3A0A075B6K6 122 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 IGLL5B9A064 214 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 H7C423 109 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 C3orf79P0CE67 100 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 FGF6P10767 208 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 KRTAP5-11Q6L8G4 156 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 LYPD5Q6UWN5 251 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 Q6ZUT4 128 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 SPATA12Q7Z6I5 190 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 FAM104AQ969W3 186 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 TMEM141Q96I45 108 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 CHCHD5Q9BSY4 110 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 PYGO1Q9Y3Y4 419 aa4.55□□□□□ -1.68
USP48-208ENST00000479177 ALMS1Q8TCU4 4167 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.54□□□□□ -1.68
USP48-208ENST00000479177 SYS1-DBNDD2H3BUS1 97 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 UBE2L6O14933 153 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 ZNF25P17030 456 aaPredicted RBP4.54□□□□□ -1.68
USP48-208ENST00000479177 AKR1D1P51857 326 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 KRTDAPP60985 99 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 MRPS36P82909 103 aaKnown RBP4.54□□□□□ -1.68
USP48-208ENST00000479177 SMAGPQ0VAQ4 97 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 GAGE6Q13070 117 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 ESRGQ1W209 222 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 Q8N976 141 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 BAALCQ8WXS3 180 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 OPRPNQ99935 248 aaPredicted RBP4.54□□□□□ -1.68
USP48-208ENST00000479177 MAP1LC3CQ9BXW4 147 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 APLNQ9ULZ1 77 aa4.54□□□□□ -1.68
USP48-208ENST00000479177 CSDC2Q9Y534 153 aaKnown RBP4.54□□□□□ -1.68
USP48-208ENST00000479177 DNAH1Q9P2D7 4330 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 PKIAP61925 76 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 RBX1P62877 108 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 MPV17L2Q567V2 206 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 LINC01545Q5VT33 79 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 AMMECR1LQ6DCA0 310 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 PET117Q6UWS5 81 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 Q6ZN92 141 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 WFDC10BQ8IUB3 73 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 OR5A1Q8NGJ0 315 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 MUC7Q8TAX7 377 aa4.53□□□□□ -1.68
USP48-208ENST00000479177 KLK5Q9Y337 293 aaPredicted RBP4.53□□□□□ -1.68
USP48-208ENST00000479177 MRPS16Q9Y3D3 137 aaKnown RBP4.53□□□□□ -1.68
USP48-208ENST00000479177 IGLV4-60A0A075B6I1 120 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 TRAV12-1A0A0B4J245 112 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 TRAV8-6A0A0B4J262 113 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 A0A1B0GUV1 79 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 C20orf202A1L168 122 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 H0Y8G0 127 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 PRSS1P07477 247 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 KRTAP10-7P60409 375 aaPredicted RBP4.52□□□□□ -1.69
USP48-208ENST00000479177 RNASE13Q5GAN3 156 aaKnown RBP4.52□□□□□ -1.69
USP48-208ENST00000479177 PYY3Q5JQD4 70 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 PAPPA-AS1Q5QFB9 102 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 ZC2HC1BQ5TFG8 222 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms