RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 AP5S1Q9NUS5 200 aa15.03■□□□□ -0
C9orf3-215ENST00000478473 C7orf77A4D0Y5 90 aa15.02■□□□□ -0
C9orf3-215ENST00000478473 PPP1R2P9O14990 202 aa15.02■□□□□ -0
C9orf3-215ENST00000478473 RPL32P62910 135 aaKnown RBP15.02■□□□□ -0
C9orf3-215ENST00000478473 MRPL51Q4U2R6 128 aaKnown RBP15.02■□□□□ -0
C9orf3-215ENST00000478473 TMEM101Q96IK0 257 aa15.02■□□□□ -0
C9orf3-215ENST00000478473 CDC42SE2Q9NRR3 84 aa15.02■□□□□ -0
C9orf3-215ENST00000478473 CSDC2Q9Y534 153 aaKnown RBP15.02■□□□□ -0
C9orf3-215ENST00000478473 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.02■□□□□ -0
C9orf3-215ENST00000478473 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.01□□□□□ -0.01
C9orf3-215ENST00000478473 SMKR1H3BMG3 65 aa15.01□□□□□ -0.01
C9orf3-215ENST00000478473 C20orf78Q9BR46 151 aa15.01□□□□□ -0.01
C9orf3-215ENST00000478473 LINC00959A0A1B0GUT2 108 aa15□□□□□ -0.01
C9orf3-215ENST00000478473 A0A1B0GXF2 115 aa15□□□□□ -0.01
C9orf3-215ENST00000478473 FOXI1Q12951 378 aa15□□□□□ -0.01
C9orf3-215ENST00000478473 GVQW2A0A096LPI5 108 aaPredicted RBP14.99□□□□□ -0.01
C9orf3-215ENST00000478473 IGKV3OR2-268A0A0C4DH90 116 aa14.99□□□□□ -0.01
C9orf3-215ENST00000478473 PANO1I0J062 215 aa14.99□□□□□ -0.01
C9orf3-215ENST00000478473 IGHV3-64A0A075B6Q5 118 aa14.98□□□□□ -0.01
C9orf3-215ENST00000478473 S100A8P05109 93 aa14.98□□□□□ -0.01
C9orf3-215ENST00000478473 CAMPP49913 170 aa14.98□□□□□ -0.01
C9orf3-215ENST00000478473 ZNF664Q8N3J9 261 aa14.97□□□□□ -0.01
C9orf3-215ENST00000478473 KIR2DL4Q99706 377 aa14.97□□□□□ -0.01
C9orf3-215ENST00000478473 HBBP68871 147 aa14.96□□□□□ -0.01
C9orf3-215ENST00000478473 CCL25O15444 150 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 FCER1GP30273 86 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 SMAGPQ0VAQ4 97 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 ATP5L2Q7Z4Y8 100 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 TIMM21Q9BVV7 248 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 UBE2D4Q9Y2X8 147 aa14.95□□□□□ -0.02
C9orf3-215ENST00000478473 F8W036 122 aa14.94□□□□□ -0.02
C9orf3-215ENST00000478473 PHOX2AO14813 284 aa14.94□□□□□ -0.02
C9orf3-215ENST00000478473 TCAPO15273 167 aa14.94□□□□□ -0.02
C9orf3-215ENST00000478473 CKS2P33552 79 aa14.94□□□□□ -0.02
C9orf3-215ENST00000478473 PNRC1Q12796 327 aaPredicted RBP14.94□□□□□ -0.02
C9orf3-215ENST00000478473 CD164L2Q6UWJ8 174 aa14.94□□□□□ -0.02
C9orf3-215ENST00000478473 KRTAP29-1A8MX34 341 aaPredicted RBP14.93□□□□□ -0.02
C9orf3-215ENST00000478473 TNFRSF6BO95407 300 aa14.93□□□□□ -0.02
C9orf3-215ENST00000478473 PPBPP02775 128 aa14.93□□□□□ -0.02
C9orf3-215ENST00000478473 SS18Q15532 418 aa14.93□□□□□ -0.02
C9orf3-215ENST00000478473 XCL1P47992 114 aa14.92□□□□□ -0.02
C9orf3-215ENST00000478473 MRPL54Q6P161 138 aaKnown RBP14.92□□□□□ -0.02
C9orf3-215ENST00000478473 SPACA4Q8TDM5 124 aa14.92□□□□□ -0.02
C9orf3-215ENST00000478473 IGHV1-58A0A0C4DH39 117 aa14.91□□□□□ -0.02
C9orf3-215ENST00000478473 RAB14P61106 215 aa14.91□□□□□ -0.02
C9orf3-215ENST00000478473 HIGD2BQ4VC39 106 aa14.91□□□□□ -0.02
C9orf3-215ENST00000478473 TMEM18Q96B42 140 aa14.9□□□□□ -0.02
C9orf3-215ENST00000478473 SMIM2Q9BVW6 85 aa14.9□□□□□ -0.02
C9orf3-215ENST00000478473 C1orf196B1AJZ1 125 aa14.89□□□□□ -0.03
C9orf3-215ENST00000478473 D6R8Y8 96 aa14.89□□□□□ -0.03
C9orf3-215ENST00000478473 RPL37AP61513 92 aaKnown RBP14.88□□□□□ -0.03
C9orf3-215ENST00000478473 CLLU1Q5K131 121 aa14.88□□□□□ -0.03
C9orf3-215ENST00000478473 PLAC8Q9NZF1 115 aa14.88□□□□□ -0.03
C9orf3-215ENST00000478473 A0A087WYN8 130 aa14.87□□□□□ -0.03
C9orf3-215ENST00000478473 NPYP01303 97 aa14.87□□□□□ -0.03
C9orf3-215ENST00000478473 FAM104AQ969W3 186 aa14.87□□□□□ -0.03
C9orf3-215ENST00000478473 ANAPC16Q96DE5 110 aa14.87□□□□□ -0.03
C9orf3-215ENST00000478473 CHTF8P0CG12 524 aa14.86□□□□□ -0.03
C9orf3-215ENST00000478473 COX6A2Q02221 97 aa14.86□□□□□ -0.03
C9orf3-215ENST00000478473 PRSS47A8MTI9 375 aa14.85□□□□□ -0.03
C9orf3-215ENST00000478473 MT-ND4LP03901 98 aa14.85□□□□□ -0.03
C9orf3-215ENST00000478473 ORMDL3Q8N138 153 aa14.85□□□□□ -0.03
C9orf3-215ENST00000478473 PRSS3P2Q8NHM4 247 aa14.85□□□□□ -0.03
C9orf3-215ENST00000478473 LRP1Q07954 4544 aaKnown RBP14.84□□□□□ -0.03
C9orf3-215ENST00000478473 MRPS36P82909 103 aaKnown RBP14.83□□□□□ -0.04
C9orf3-215ENST00000478473 TMEM136Q6ZRR5 245 aa14.83□□□□□ -0.04
C9orf3-215ENST00000478473 Q6ZUT4 128 aa14.83□□□□□ -0.04
C9orf3-215ENST00000478473 SPANXA1Q9NS26 97 aa14.83□□□□□ -0.04
C9orf3-215ENST00000478473 OXTP01178 125 aa14.82□□□□□ -0.04
C9orf3-215ENST00000478473 PKIGQ9Y2B9 76 aa14.82□□□□□ -0.04
C9orf3-215ENST00000478473 LAMTOR2Q9Y2Q5 125 aa14.82□□□□□ -0.04
C9orf3-215ENST00000478473 J3QL48 77 aa14.81□□□□□ -0.04
C9orf3-215ENST00000478473 COX7A2LO14548 114 aa14.81□□□□□ -0.04
C9orf3-215ENST00000478473 RPL39P62891 51 aaKnown RBP14.81□□□□□ -0.04
C9orf3-215ENST00000478473 RNASE13Q5GAN3 156 aaKnown RBP14.8□□□□□ -0.04
C9orf3-215ENST00000478473 PRELID3AQ96N28 172 aa14.8□□□□□ -0.04
C9orf3-215ENST00000478473 TRAV13-1A0A0B4J241 112 aa14.79□□□□□ -0.04
C9orf3-215ENST00000478473 ZNF561-AS1K7EIQ3 104 aa14.79□□□□□ -0.04
C9orf3-215ENST00000478473 HNRNPA3P51991 378 aaKnown RBP14.79□□□□□ -0.04
C9orf3-215ENST00000478473 PKHD1L1Q86WI1 4243 aa14.79□□□□□ -0.04
C9orf3-215ENST00000478473 DPH3Q96FX2 82 aa14.79□□□□□ -0.04
C9orf3-215ENST00000478473 CARD19Q96LW7 228 aa14.79□□□□□ -0.04
C9orf3-215ENST00000478473 SYCNQ0VAF6 134 aa14.78□□□□□ -0.04
C9orf3-215ENST00000478473 UQCC3Q6UW78 93 aa14.78□□□□□ -0.04
C9orf3-215ENST00000478473 LINC00526Q96FQ7 95 aa14.78□□□□□ -0.04
C9orf3-215ENST00000478473 LINC00474Q9P2X8 69 aa14.78□□□□□ -0.04
C9orf3-215ENST00000478473 FAT3Q8TDW7 4589 aa14.78□□□□□ -0.04
C9orf3-215ENST00000478473 A0A096LNI7 61 aa14.77□□□□□ -0.05
C9orf3-215ENST00000478473 IFITM2Q01629 132 aa14.77□□□□□ -0.05
C9orf3-215ENST00000478473 IMMP2LQ96T52 175 aa14.77□□□□□ -0.05
C9orf3-215ENST00000478473 PYGO1Q9Y3Y4 419 aa14.77□□□□□ -0.05
C9orf3-215ENST00000478473 MALP21145 153 aa14.76□□□□□ -0.05
C9orf3-215ENST00000478473 C2orf48Q96LS8 159 aa14.76□□□□□ -0.05
C9orf3-215ENST00000478473 IGLV4-69A0A075B6H9 119 aa14.75□□□□□ -0.05
C9orf3-215ENST00000478473 IGHV3OR16-9A0A0B4J2B5 98 aa14.75□□□□□ -0.05
C9orf3-215ENST00000478473 MAJINQ3KP22 176 aa14.75□□□□□ -0.05
C9orf3-215ENST00000478473 ADCYAP1P18509 176 aa14.74□□□□□ -0.05
C9orf3-215ENST00000478473 RAB5AP20339 215 aa14.74□□□□□ -0.05
C9orf3-215ENST00000478473 IGKV2-24A0A0C4DH68 120 aa14.73□□□□□ -0.05
C9orf3-215ENST00000478473 TMEM218A2RU14 115 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms