RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SNURFQ9Y675 71 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 SMIM26A0A096LP01 95 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 LINC00315P59091 139 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 ENHOQ6UWT2 76 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 MPLKIPQ8TAP9 179 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 DMXL1Q9Y485 3027 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 RELNP78509 3460 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 NDUFC2-KCTD14E9PQ53 114 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 LY6LH3BQJ8 138 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 RPL28P46779 137 aaKnown RBP3.1□□□□□ -1.91
VPS50-210ENST00000471188 S100A7L2Q5SY68 101 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 C9orf129Q5T035 196 aaKnown RBP3.1□□□□□ -1.91
VPS50-210ENST00000471188 FAM19A1Q7Z5A9 133 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 LINC00474Q9P2X8 69 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 UBE2D4Q9Y2X8 147 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 LENEPQ9Y5L5 61 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 KIF25-AS1Q9Y6Z4 181 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 ATMQ13315 3056 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 CRPP02741 224 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 CDSNQ15517 529 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 PIK3CD-AS1Q5SR53 167 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 FAM222AQ5U5X8 452 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 MRPL53Q96EL3 112 aaKnown RBP3.1□□□□□ -1.91
VPS50-210ENST00000471188 CDKN2A-AS1Q9UH64 79 aa3.1□□□□□ -1.91
VPS50-210ENST00000471188 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.09□□□□□ -1.91
VPS50-210ENST00000471188 IGKV2-29A2NJV5 120 aaPredicted RBP3.09□□□□□ -1.91
VPS50-210ENST00000471188 M0QY20 66 aa3.09□□□□□ -1.91
VPS50-210ENST00000471188 SLPIP03973 132 aa3.09□□□□□ -1.91
VPS50-210ENST00000471188 PSMB8P28062 276 aa3.09□□□□□ -1.91
VPS50-210ENST00000471188 MRPS36P82909 103 aaKnown RBP3.09□□□□□ -1.91
VPS50-210ENST00000471188 IL17DQ8TAD2 202 aa3.09□□□□□ -1.91
VPS50-210ENST00000471188 COPS9Q8WXC6 57 aa3.09□□□□□ -1.91
VPS50-210ENST00000471188 F8WEM9 126 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 G3V318 75 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 LECT2O14960 151 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 TIMM17BO60830 172 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 MED14OSP0DP75 135 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 SS18Q15532 418 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 SVEP1Q4LDE5 3571 aa3.09□□□□□ -1.92
VPS50-210ENST00000471188 A0A087WYN8 130 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 TRBV6-5A0A0K0K1A5 114 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 BSPH1Q075Z2 132 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 BEAN1Q3B7T3 259 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 HIST2H2BCQ6DN03 193 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 HIST2H2BDQ6DRA6 164 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 SOSTDC1Q6X4U4 206 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 RMI2Q96E14 147 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 KRTAP4-11Q9BYQ6 195 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 C22orf24Q9Y442 160 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 NBASA2RRP1 2371 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 IGHV3-38A0A0C4DH36 116 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 PRB1P04280 392 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 FP248Q71RG6 208 aaPredicted RBP3.08□□□□□ -1.92
VPS50-210ENST00000471188 LINC00482Q8N8I6 264 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 FDCSPQ8NFU4 85 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 RNASE6Q93091 150 aaKnown RBP3.08□□□□□ -1.92
VPS50-210ENST00000471188 LAMA5O15230 3695 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 IGHV7-81A0A0B4J1V7 117 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 H7BZZ5 65 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 NDUFA1O15239 70 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 ATP6V0E1O15342 81 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 RPL36AP83881 106 aaKnown RBP3.08□□□□□ -1.92
VPS50-210ENST00000471188 SEM1Q6ZVN7 128 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 NPBQ8NG41 125 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 RPL36ALQ969Q0 106 aaKnown RBP3.08□□□□□ -1.92
VPS50-210ENST00000471188 CCDC140Q96MF4 163 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 KAAG1Q9UBP8 84 aa3.08□□□□□ -1.92
VPS50-210ENST00000471188 TRBV7-6A0A0J9YX20 115 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 UBL5Q9BZL1 73 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 PLA2G2DQ9UNK4 145 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 TRAV13-2A0A0B4J235 113 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 PROK1P58294 105 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 MIR7-3HGQ8N6C7 128 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 ITLN2Q8WWU7 325 aaPredicted RBP3.07□□□□□ -1.92
VPS50-210ENST00000471188 OVOL2Q9BRP0 275 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 TOMM7Q9P0U1 55 aa3.07□□□□□ -1.92
VPS50-210ENST00000471188 TECTAO75443 2155 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 CCKP06307 115 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 HAMPP81172 84 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 LCE4AQ5TA78 99 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 ACACAQ13085 2346 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 IGHV1OR15-1A0A075B7D0 117 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 LY6HO94772 140 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 IGHV3-11P01762 117 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 NBL1P41271 181 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 LYPD5Q6UWN5 251 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 UNQ9165/PRO28630Q6UXU0 137 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 FAM110DQ8TAY7 271 aaPredicted RBP3.06□□□□□ -1.92
VPS50-210ENST00000471188 BPESC1Q9GZL8 116 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 SIRPDQ9H106 197 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 C16orf95Q9H693 158 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 SND1-IT1Q9HBX3 110 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 RETNQ9HD89 108 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 MUC3AQ02505 3323 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 A0A1W2PRX2 142 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 LINC00158P58513 81 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 SNRPD3P62318 126 aaKnown RBP3.06□□□□□ -1.92
VPS50-210ENST00000471188 SMIM11BQ8TCY0 68 aa3.06□□□□□ -1.92
VPS50-210ENST00000471188 TRAV7A0A075B6U4 112 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms