RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CIRBPQ14011 172 aaKnown RBP11.15□□□□□ -0.62
COL7A1-206ENST00000466591 AMN1Q8IY45 258 aa11.15□□□□□ -0.62
COL7A1-206ENST00000466591 LYPD6BQ8NI32 183 aa11.15□□□□□ -0.62
COL7A1-206ENST00000466591 LINC00959A0A1B0GUT2 108 aa11.14□□□□□ -0.63
COL7A1-206ENST00000466591 TSHBP01222 138 aa11.14□□□□□ -0.63
COL7A1-206ENST00000466591 MALP21145 153 aa11.14□□□□□ -0.63
COL7A1-206ENST00000466591 FOXI1Q12951 378 aa11.14□□□□□ -0.63
COL7A1-206ENST00000466591 VCYO14598 125 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 PHOX2AO14813 284 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 RAB4AP20338 218 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 ADIRFQ15847 76 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 Q6ZRU5 148 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 ZNF664Q8N3J9 261 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 STPG4Q8N801 248 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 PRSS3P2Q8NHM4 247 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 CARD19Q96LW7 228 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 KIR2DL4Q99706 377 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 LINC00474Q9P2X8 69 aa11.13□□□□□ -0.63
COL7A1-206ENST00000466591 GAS8-AS1O95177 125 aa11.12□□□□□ -0.63
COL7A1-206ENST00000466591 SRP19P09132 144 aaKnown RBP11.12□□□□□ -0.63
COL7A1-206ENST00000466591 TMEM241Q24JQ0 296 aa11.12□□□□□ -0.63
COL7A1-206ENST00000466591 PLAC8Q9NZF1 115 aa11.12□□□□□ -0.63
COL7A1-206ENST00000466591 NAT8BQ9UHF3 227 aa11.12□□□□□ -0.63
COL7A1-206ENST00000466591 SMKR1H3BMG3 65 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 ESDP10768 282 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 FAM74A3Q4VXF1 159 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 NUP35Q8NFH5 326 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 ISOC2Q96AB3 205 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 TMEM18Q96B42 140 aa11.11□□□□□ -0.63
COL7A1-206ENST00000466591 TRBV27A0A0K0K1C4 114 aa11.1□□□□□ -0.63
COL7A1-206ENST00000466591 PPP1R2P9O14990 202 aa11.1□□□□□ -0.63
COL7A1-206ENST00000466591 SUMO2P61956 95 aaKnown RBP11.1□□□□□ -0.63
COL7A1-206ENST00000466591 CD164L2Q6UWJ8 174 aa11.1□□□□□ -0.63
COL7A1-206ENST00000466591 LINC00526Q96FQ7 95 aa11.1□□□□□ -0.63
COL7A1-206ENST00000466591 CDC42SE2Q9NRR3 84 aa11.1□□□□□ -0.63
COL7A1-206ENST00000466591 CAMPP49913 170 aa11.09□□□□□ -0.63
COL7A1-206ENST00000466591 POLR2KP53803 58 aaKnown RBP11.09□□□□□ -0.63
COL7A1-206ENST00000466591 MRPL52Q86TS9 123 aaKnown RBP11.09□□□□□ -0.63
COL7A1-206ENST00000466591 V9GYV3 84 aa11.09□□□□□ -0.63
COL7A1-206ENST00000466591 A0A096LNI7 61 aa11.08□□□□□ -0.64
COL7A1-206ENST00000466591 C1orf196B1AJZ1 125 aa11.08□□□□□ -0.64
COL7A1-206ENST00000466591 COX7A2LO14548 114 aa11.08□□□□□ -0.64
COL7A1-206ENST00000466591 SYCNQ0VAF6 134 aa11.08□□□□□ -0.64
COL7A1-206ENST00000466591 NAT8Q9UHE5 227 aa11.08□□□□□ -0.64
COL7A1-206ENST00000466591 CKS2P33552 79 aa11.07□□□□□ -0.64
COL7A1-206ENST00000466591 PEA15Q15121 130 aa11.07□□□□□ -0.64
COL7A1-206ENST00000466591 LRP1Q07954 4544 aaKnown RBP11.06□□□□□ -0.64
COL7A1-206ENST00000466591 TRAV13-1A0A0B4J241 112 aa11.06□□□□□ -0.64
COL7A1-206ENST00000466591 RPL23P62829 140 aaKnown RBP11.06□□□□□ -0.64
COL7A1-206ENST00000466591 RNASE13Q5GAN3 156 aaKnown RBP11.06□□□□□ -0.64
COL7A1-206ENST00000466591 A0A1B0GW15 77 aa11.05□□□□□ -0.64
COL7A1-206ENST00000466591 APOMO95445 188 aa11.05□□□□□ -0.64
COL7A1-206ENST00000466591 S100A8P05109 93 aa11.05□□□□□ -0.64
COL7A1-206ENST00000466591 CAMK2N2Q96S95 79 aa11.05□□□□□ -0.64
COL7A1-206ENST00000466591 F8W036 122 aa11.04□□□□□ -0.64
COL7A1-206ENST00000466591 TCAPO15273 167 aa11.04□□□□□ -0.64
COL7A1-206ENST00000466591 GAGE2BQ13066 116 aa11.04□□□□□ -0.64
COL7A1-206ENST00000466591 MRPL51Q4U2R6 128 aaKnown RBP11.04□□□□□ -0.64
COL7A1-206ENST00000466591 FAM104BQ5XKR9 115 aa11.04□□□□□ -0.64
COL7A1-206ENST00000466591 FAT3Q8TDW7 4589 aa11.03□□□□□ -0.64
COL7A1-206ENST00000466591 LOC107984640A0A0U1RRK4 108 aa11.03□□□□□ -0.64
COL7A1-206ENST00000466591 PRR3P79522 188 aaKnown RBP11.03□□□□□ -0.64
COL7A1-206ENST00000466591 NRACQ8N912 160 aa11.03□□□□□ -0.64
COL7A1-206ENST00000466591 UBE2D4Q9Y2X8 147 aa11.03□□□□□ -0.64
COL7A1-206ENST00000466591 IGLV4-69A0A075B6H9 119 aa11.02□□□□□ -0.65
COL7A1-206ENST00000466591 LINC00862A6NCI5 91 aa11.02□□□□□ -0.65
COL7A1-206ENST00000466591 MRPL54Q6P161 138 aaKnown RBP11.02□□□□□ -0.65
COL7A1-206ENST00000466591 C20orf78Q9BR46 151 aa11.02□□□□□ -0.65
COL7A1-206ENST00000466591 CSDC2Q9Y534 153 aaKnown RBP11.02□□□□□ -0.65
COL7A1-206ENST00000466591 SMIM27A0A1W2PRY6 76 aa11.01□□□□□ -0.65
COL7A1-206ENST00000466591 RPL18AQ02543 176 aaKnown RBP11.01□□□□□ -0.65
COL7A1-206ENST00000466591 Q6ZUT4 128 aa11.01□□□□□ -0.65
COL7A1-206ENST00000466591 C5orf38Q86SI9 138 aa11.01□□□□□ -0.65
COL7A1-206ENST00000466591 HBBP68871 147 aa11□□□□□ -0.65
COL7A1-206ENST00000466591 PKHD1L1Q86WI1 4243 aa11□□□□□ -0.65
COL7A1-206ENST00000466591 TNFRSF6BO95407 300 aa10.99□□□□□ -0.65
COL7A1-206ENST00000466591 SPAG11BQ08648 103 aa10.99□□□□□ -0.65
COL7A1-206ENST00000466591 REG3GQ6UW15 175 aa10.99□□□□□ -0.65
COL7A1-206ENST00000466591 D6R8Y8 96 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 RAB5AP20339 215 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 PTTG1IPP53801 180 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 Q6ZRP5 223 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 TIMM21Q9BVV7 248 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 SMDT1Q9H4I9 107 aa10.98□□□□□ -0.65
COL7A1-206ENST00000466591 SMIM2Q9BVW6 85 aa10.97□□□□□ -0.65
COL7A1-206ENST00000466591 IFITM10A6NMD0 228 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 C9JQL5 133 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 MT1HL1P0DM35 61 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 RPL39P62891 51 aaKnown RBP10.96□□□□□ -0.65
COL7A1-206ENST00000466591 ORAOV1Q8WV07 137 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 C2orf48Q96LS8 159 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 SPANXA1Q9NS26 97 aa10.96□□□□□ -0.65
COL7A1-206ENST00000466591 TRBV24-1A0A075B6N3 115 aa10.95□□□□□ -0.66
COL7A1-206ENST00000466591 A0A1B0GVG6 124 aa10.95□□□□□ -0.66
COL7A1-206ENST00000466591 PPBPP02775 128 aa10.95□□□□□ -0.66
COL7A1-206ENST00000466591 SRSF3P84103 164 aaKnown RBP10.95□□□□□ -0.66
COL7A1-206ENST00000466591 SPINK6Q6UWN8 80 aa10.95□□□□□ -0.66
COL7A1-206ENST00000466591 IFI27P40305 119 aaPredicted RBP10.94□□□□□ -0.66
COL7A1-206ENST00000466591 RPL32P62910 135 aaKnown RBP10.94□□□□□ -0.66
COL7A1-206ENST00000466591 ORMDL3Q8N138 153 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms