RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SMIM7Q9BQ49 75 aa12.05□□□□□ -0.48
COL9A3-206ENST00000466532 TMEM191AQ9H0A3 160 aa12.05□□□□□ -0.48
COL9A3-206ENST00000466532 IGHV1-58A0A0C4DH39 117 aa12.04□□□□□ -0.48
COL9A3-206ENST00000466532 HIGD1CA8MV81 97 aa12.04□□□□□ -0.48
COL9A3-206ENST00000466532 TSKUQ8WUA8 353 aa12.04□□□□□ -0.48
COL9A3-206ENST00000466532 EIF5A2Q9GZV4 153 aaKnown RBP12.04□□□□□ -0.48
COL9A3-206ENST00000466532 SS18Q15532 418 aa12.03□□□□□ -0.48
COL9A3-206ENST00000466532 LINC01551Q86U37 167 aa12.03□□□□□ -0.48
COL9A3-206ENST00000466532 LINC00526Q96FQ7 95 aa12.03□□□□□ -0.48
COL9A3-206ENST00000466532 FAM210AQ96ND0 272 aa12.03□□□□□ -0.48
COL9A3-206ENST00000466532 RAB4AP20338 218 aa12.02□□□□□ -0.49
COL9A3-206ENST00000466532 POLR2KP53803 58 aaKnown RBP12.02□□□□□ -0.49
COL9A3-206ENST00000466532 PRR3P79522 188 aaKnown RBP12.02□□□□□ -0.49
COL9A3-206ENST00000466532 CDC42SE2Q9NRR3 84 aa12.02□□□□□ -0.49
COL9A3-206ENST00000466532 PKIGQ9Y2B9 76 aa12.02□□□□□ -0.49
COL9A3-206ENST00000466532 TNXBP22105 4242 aa12.01□□□□□ -0.49
COL9A3-206ENST00000466532 TRBV27A0A0K0K1C4 114 aa12.01□□□□□ -0.49
COL9A3-206ENST00000466532 MRPL52Q86TS9 123 aaKnown RBP12.01□□□□□ -0.49
COL9A3-206ENST00000466532 AMN1Q8IY45 258 aa12.01□□□□□ -0.49
COL9A3-206ENST00000466532 CARD19Q96LW7 228 aa12.01□□□□□ -0.49
COL9A3-206ENST00000466532 OSTCQ9NRP0 149 aa12.01□□□□□ -0.49
COL9A3-206ENST00000466532 hCG_2014768A0A024R1R8 64 aa12□□□□□ -0.49
COL9A3-206ENST00000466532 C7orf77A4D0Y5 90 aa12□□□□□ -0.49
COL9A3-206ENST00000466532 ZNF727A8MUV8 499 aa12□□□□□ -0.49
COL9A3-206ENST00000466532 ZNF664Q8N3J9 261 aa12□□□□□ -0.49
COL9A3-206ENST00000466532 LINC00474Q9P2X8 69 aa12□□□□□ -0.49
COL9A3-206ENST00000466532 ZNF561-AS1K7EIQ3 104 aa11.99□□□□□ -0.49
COL9A3-206ENST00000466532 CD164L2Q6UWJ8 174 aa11.99□□□□□ -0.49
COL9A3-206ENST00000466532 SMKR1H3BMG3 65 aa11.98□□□□□ -0.49
COL9A3-206ENST00000466532 SRP19P09132 144 aaKnown RBP11.97□□□□□ -0.49
COL9A3-206ENST00000466532 FCER1GP30273 86 aa11.97□□□□□ -0.49
COL9A3-206ENST00000466532 SYCNQ0VAF6 134 aa11.97□□□□□ -0.49
COL9A3-206ENST00000466532 RIGQ13278 110 aa11.97□□□□□ -0.49
COL9A3-206ENST00000466532 V9GYV3 84 aa11.97□□□□□ -0.49
COL9A3-206ENST00000466532 VCYO14598 125 aa11.96□□□□□ -0.49
COL9A3-206ENST00000466532 NUP35Q8NFH5 326 aa11.96□□□□□ -0.49
COL9A3-206ENST00000466532 PPP1R17O96001 155 aa11.95□□□□□ -0.5
COL9A3-206ENST00000466532 CAMPP49913 170 aa11.95□□□□□ -0.5
COL9A3-206ENST00000466532 LINC01600Q96MT4 127 aa11.95□□□□□ -0.5
COL9A3-206ENST00000466532 C1orf196B1AJZ1 125 aa11.94□□□□□ -0.5
COL9A3-206ENST00000466532 MALP21145 153 aa11.94□□□□□ -0.5
COL9A3-206ENST00000466532 SUMO2P61956 95 aaKnown RBP11.94□□□□□ -0.5
COL9A3-206ENST00000466532 NRACQ8N912 160 aa11.94□□□□□ -0.5
COL9A3-206ENST00000466532 IGLV4-69A0A075B6H9 119 aa11.93□□□□□ -0.5
COL9A3-206ENST00000466532 SMAGPQ0VAQ4 97 aa11.93□□□□□ -0.5
COL9A3-206ENST00000466532 RNASE13Q5GAN3 156 aaKnown RBP11.93□□□□□ -0.5
COL9A3-206ENST00000466532 ISOC2Q96AB3 205 aa11.93□□□□□ -0.5
COL9A3-206ENST00000466532 KIR2DL4Q99706 377 aa11.93□□□□□ -0.5
COL9A3-206ENST00000466532 UBE2D4Q9Y2X8 147 aa11.93□□□□□ -0.5
COL9A3-206ENST00000466532 CSDC2Q9Y534 153 aaKnown RBP11.93□□□□□ -0.5
COL9A3-206ENST00000466532 COX7A2LO14548 114 aa11.92□□□□□ -0.5
COL9A3-206ENST00000466532 PTTG1IPP53801 180 aa11.92□□□□□ -0.5
COL9A3-206ENST00000466532 NAT8BQ9UHF3 227 aa11.92□□□□□ -0.5
COL9A3-206ENST00000466532 LOC107984640A0A0U1RRK4 108 aa11.91□□□□□ -0.5
COL9A3-206ENST00000466532 PPP1R2P9O14990 202 aa11.91□□□□□ -0.5
COL9A3-206ENST00000466532 GAGE2BQ13066 116 aa11.91□□□□□ -0.5
COL9A3-206ENST00000466532 TMEM241Q24JQ0 296 aa11.91□□□□□ -0.5
COL9A3-206ENST00000466532 SPINK6Q6UWN8 80 aa11.91□□□□□ -0.5
COL9A3-206ENST00000466532 TRAV13-1A0A0B4J241 112 aa11.9□□□□□ -0.5
COL9A3-206ENST00000466532 RPL23P62829 140 aaKnown RBP11.9□□□□□ -0.5
COL9A3-206ENST00000466532 MRPL51Q4U2R6 128 aaKnown RBP11.9□□□□□ -0.5
COL9A3-206ENST00000466532 Q6ZRP5 223 aa11.9□□□□□ -0.5
COL9A3-206ENST00000466532 ADIRFQ15847 76 aa11.89□□□□□ -0.51
COL9A3-206ENST00000466532 FAM74A3Q4VXF1 159 aa11.89□□□□□ -0.51
COL9A3-206ENST00000466532 FAM104BQ5XKR9 115 aa11.89□□□□□ -0.51
COL9A3-206ENST00000466532 Q6ZUT4 128 aa11.89□□□□□ -0.51
COL9A3-206ENST00000466532 CAMK2N2Q96S95 79 aa11.89□□□□□ -0.51
COL9A3-206ENST00000466532 A0A0J9YXV3 536 aa11.88□□□□□ -0.51
COL9A3-206ENST00000466532 REG3GQ6UW15 175 aa11.88□□□□□ -0.51
COL9A3-206ENST00000466532 C5orf38Q86SI9 138 aa11.88□□□□□ -0.51
COL9A3-206ENST00000466532 TMEM18Q96B42 140 aa11.88□□□□□ -0.51
COL9A3-206ENST00000466532 SMIM27A0A1W2PRY6 76 aa11.87□□□□□ -0.51
COL9A3-206ENST00000466532 ODF1Q14990 250 aa11.87□□□□□ -0.51
COL9A3-206ENST00000466532 TIMM21Q9BVV7 248 aa11.87□□□□□ -0.51
COL9A3-206ENST00000466532 LRP2P98164 4655 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 LINC00862A6NCI5 91 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 APOMO95445 188 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 CKS2P33552 79 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 SRSF9Q13242 221 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL9A3-206ENST00000466532 C2orf48Q96LS8 159 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 C20orf78Q9BR46 151 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 NAT8Q9UHE5 227 aa11.86□□□□□ -0.51
COL9A3-206ENST00000466532 A0A1W2PNN7 141 aa11.85□□□□□ -0.51
COL9A3-206ENST00000466532 TRBV24-1A0A075B6N3 115 aa11.84□□□□□ -0.51
COL9A3-206ENST00000466532 A0A1B0GW15 77 aa11.84□□□□□ -0.51
COL9A3-206ENST00000466532 RPL18AQ02543 176 aaKnown RBP11.84□□□□□ -0.51
COL9A3-206ENST00000466532 SPAG11BQ08648 103 aa11.84□□□□□ -0.51
COL9A3-206ENST00000466532 C9JQL5 133 aa11.83□□□□□ -0.52
COL9A3-206ENST00000466532 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.83□□□□□ -0.52
COL9A3-206ENST00000466532 TNFRSF6BO95407 300 aa11.83□□□□□ -0.52
COL9A3-206ENST00000466532 KRTAP10-8P60410 259 aa11.83□□□□□ -0.52
COL9A3-206ENST00000466532 RPL39P62891 51 aaKnown RBP11.83□□□□□ -0.52
COL9A3-206ENST00000466532 RPL32P62910 135 aaKnown RBP11.83□□□□□ -0.52
COL9A3-206ENST00000466532 TCAPO15273 167 aa11.82□□□□□ -0.52
COL9A3-206ENST00000466532 C9orf116Q5BN46 136 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-206ENST00000466532 OPRPNQ99935 248 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-206ENST00000466532 SMIM2Q9BVW6 85 aa11.82□□□□□ -0.52
COL9A3-206ENST00000466532 D6R8Y8 96 aa11.81□□□□□ -0.52
COL9A3-206ENST00000466532 SRSF3P84103 164 aaKnown RBP11.81□□□□□ -0.52
COL9A3-206ENST00000466532 MRPL54Q6P161 138 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms