RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RNASEKQ6P5S7 137 aaKnown RBP8.56□□□□□ -1.04
COL28A1-206ENST00000465339 KRTAP26-1Q6PEX3 210 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 C20orf78Q9BR46 151 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 TMEM242Q9NWH2 141 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 HERC2O95714 4834 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 LRP1BQ9NZR2 4599 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 IGLV10-54A0A075B6I4 117 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-206ENST00000465339 PPBPP02775 128 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 FCER1GP30273 86 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 TMEM101Q96IK0 257 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 BTF3L4Q96K17 158 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 KIR2DL4Q99706 377 aa8.55□□□□□ -1.04
COL28A1-206ENST00000465339 KRTAP9-6A0A140TA67 174 aa8.54□□□□□ -1.04
COL28A1-206ENST00000465339 USP17L23D6RBM5 183 aa8.54□□□□□ -1.04
COL28A1-206ENST00000465339 TCAPO15273 167 aa8.54□□□□□ -1.04
COL28A1-206ENST00000465339 XGP55808 180 aa8.54□□□□□ -1.04
COL28A1-206ENST00000465339 RPL32P62910 135 aaKnown RBP8.54□□□□□ -1.04
COL28A1-206ENST00000465339 DNAH5Q8TE73 4624 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 C7orf77A4D0Y5 90 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 D6R8Y8 96 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 PHOX2AO14813 284 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 TNFRSF6BO95407 300 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 SMAGPQ0VAQ4 97 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 MRPL52Q86TS9 123 aaKnown RBP8.53□□□□□ -1.04
COL28A1-206ENST00000465339 Q8N1X5 172 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 IMMP2LQ96T52 175 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 SEC11CQ9BY50 192 aa8.53□□□□□ -1.04
COL28A1-206ENST00000465339 ADCYAP1P18509 176 aa8.52□□□□□ -1.05
COL28A1-206ENST00000465339 DGAT2L7PQ6IED9 249 aa8.52□□□□□ -1.05
COL28A1-206ENST00000465339 COMMD7Q86VX2 200 aa8.52□□□□□ -1.05
COL28A1-206ENST00000465339 OR5A1Q8NGJ0 315 aa8.52□□□□□ -1.05
COL28A1-206ENST00000465339 CTDSP1Q9GZU7 261 aa8.52□□□□□ -1.05
COL28A1-206ENST00000465339 IGKV3OR2-268A0A0C4DH90 116 aa8.51□□□□□ -1.05
COL28A1-206ENST00000465339 PRSS1P07477 247 aa8.51□□□□□ -1.05
COL28A1-206ENST00000465339 TMEM136Q6ZRR5 245 aa8.51□□□□□ -1.05
COL28A1-206ENST00000465339 ORMDL3Q8N138 153 aa8.51□□□□□ -1.05
COL28A1-206ENST00000465339 TMEM18Q96B42 140 aa8.51□□□□□ -1.05
COL28A1-206ENST00000465339 CSDC2Q9Y534 153 aaKnown RBP8.51□□□□□ -1.05
COL28A1-206ENST00000465339 HSPG2P98160 4391 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 NPYP01303 97 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 ZNF664Q8N3J9 261 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 KRTAP4-12Q9BQ66 201 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 SMIM2Q9BVW6 85 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 CDC42SE2Q9NRR3 84 aa8.5□□□□□ -1.05
COL28A1-206ENST00000465339 GAGE12HA6NDE8 117 aa8.49□□□□□ -1.05
COL28A1-206ENST00000465339 CHCHD10Q8WYQ3 142 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-206ENST00000465339 PRELID3AQ96N28 172 aa8.49□□□□□ -1.05
COL28A1-206ENST00000465339 TIMM21Q9BVV7 248 aa8.49□□□□□ -1.05
COL28A1-206ENST00000465339 LAMTOR2Q9Y2Q5 125 aa8.49□□□□□ -1.05
COL28A1-206ENST00000465339 APOBP04114 4563 aaKnown RBP8.48□□□□□ -1.05
COL28A1-206ENST00000465339 TRAV9-1A0A075B6T8 112 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 SS18Q15532 418 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 C10orf91Q5T1B1 145 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 Q6ZSA8 131 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 FAM30AQ9NZY2 134 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 UBE2D4Q9Y2X8 147 aa8.48□□□□□ -1.05
COL28A1-206ENST00000465339 RYR1P21817 5038 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 LINC00959A0A1B0GUT2 108 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 hDV102S1A0JD36 115 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 CCL25O15444 150 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 LINC01620Q4KN68 170 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 KRTAP4-5Q9BYR2 181 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 PLA2G2DQ9UNK4 145 aa8.47□□□□□ -1.05
COL28A1-206ENST00000465339 EPM2AB3EWF7 344 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 RAB5AP20339 215 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 S100PP25815 95 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 KRTAP19-1Q8IUB9 90 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 C9orf163Q8N9P6 203 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 CARHSP1Q9Y2V2 147 aaKnown RBP8.46□□□□□ -1.06
COL28A1-206ENST00000465339 PCLOQ9Y6V0 5065 aa8.46□□□□□ -1.06
COL28A1-206ENST00000465339 CNBPP62633 177 aaKnown RBP8.45□□□□□ -1.06
COL28A1-206ENST00000465339 FOXI1Q12951 378 aa8.45□□□□□ -1.06
COL28A1-206ENST00000465339 MAP1LC3AQ9H492 121 aa8.45□□□□□ -1.06
COL28A1-206ENST00000465339 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.44□□□□□ -1.06
COL28A1-206ENST00000465339 C1orf196B1AJZ1 125 aa8.44□□□□□ -1.06
COL28A1-206ENST00000465339 XCL1P47992 114 aa8.44□□□□□ -1.06
COL28A1-206ENST00000465339 RHEBQ15382 184 aa8.44□□□□□ -1.06
COL28A1-206ENST00000465339 CD164L2Q6UWJ8 174 aa8.44□□□□□ -1.06
COL28A1-206ENST00000465339 SPANXA1Q9NS26 97 aa8.44□□□□□ -1.06
COL28A1-206ENST00000465339 SMR3BP02814 79 aaPredicted RBP8.43□□□□□ -1.06
COL28A1-206ENST00000465339 RPL39P62891 51 aaKnown RBP8.43□□□□□ -1.06
COL28A1-206ENST00000465339 HAMPP81172 84 aa8.43□□□□□ -1.06
COL28A1-206ENST00000465339 Q8N8P6 123 aa8.43□□□□□ -1.06
COL28A1-206ENST00000465339 C15orf56Q8N910 161 aa8.43□□□□□ -1.06
COL28A1-206ENST00000465339 CHAC1Q9BUX1 264 aa8.43□□□□□ -1.06
COL28A1-206ENST00000465339 LOC389332A0A1B0GUA5 103 aa8.42□□□□□ -1.06
COL28A1-206ENST00000465339 K7EMI3 77 aa8.42□□□□□ -1.06
COL28A1-206ENST00000465339 MRPS36P82909 103 aaKnown RBP8.42□□□□□ -1.06
COL28A1-206ENST00000465339 COX19Q49B96 90 aa8.42□□□□□ -1.06
COL28A1-206ENST00000465339 GNB1LQ9BYB4 327 aa8.42□□□□□ -1.06
COL28A1-206ENST00000465339 RPS10P5Q9NQ39 176 aa8.42□□□□□ -1.06
COL28A1-206ENST00000465339 GVQW2A0A096LPI5 108 aaPredicted RBP8.41□□□□□ -1.06
COL28A1-206ENST00000465339 IGHV1-58A0A0C4DH39 117 aa8.41□□□□□ -1.06
COL28A1-206ENST00000465339 SLPIP03973 132 aa8.41□□□□□ -1.06
COL28A1-206ENST00000465339 Q5VSD8 79 aa8.41□□□□□ -1.06
COL28A1-206ENST00000465339 SDIM1Q6ZPB5 146 aa8.41□□□□□ -1.06
COL28A1-206ENST00000465339 Q6ZUT4 128 aa8.41□□□□□ -1.06
COL28A1-206ENST00000465339 NXT2Q9NPJ8 142 aaKnown RBP8.41□□□□□ -1.06
COL28A1-206ENST00000465339 PYGO1Q9Y3Y4 419 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms