RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 Q9UF83 564 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 CELA1Q9UNI1 258 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 KMT2AQ03164 3969 aa8.21□□□□□ -1.09
USP54-209ENST00000464635 DLEU1O43261 78 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 IGLC3P0DOY3 106 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 ZNF25P17030 456 aaPredicted RBP8.21□□□□□ -1.1
USP54-209ENST00000464635 Q6ZTC4 211 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 CST9LQ9H4G1 147 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 UQCR10Q9UDW1 63 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 UBE2D4Q9Y2X8 147 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 PAM16Q9Y3D7 125 aa8.21□□□□□ -1.1
USP54-209ENST00000464635 CHTOPQ9Y3Y2 248 aaKnown RBP8.21□□□□□ -1.1
USP54-209ENST00000464635 TRBV25-1A0A075B6N4 114 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 DDTP30046 118 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 TIRAPP58753 221 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 RPL39P62891 51 aaKnown RBP8.2□□□□□ -1.1
USP54-209ENST00000464635 FAM19A3Q7Z5A8 133 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 NFE4Q86UQ8 179 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 VCX2Q9H322 139 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 MRPL35Q9NZE8 188 aaKnown RBP8.2□□□□□ -1.1
USP54-209ENST00000464635 APLNQ9ULZ1 77 aa8.2□□□□□ -1.1
USP54-209ENST00000464635 IGLV4-3A0A075B6K6 122 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 TRBV6-8A0A0A6YYG3 113 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 GAGE12JA6NER3 117 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 IGLL5B9A064 214 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 PAX4O43316 350 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 GAGE1Q13065 139 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 GAGE4Q13068 117 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 GAGE5Q13069 117 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 GAGE13Q4V321 117 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 NTM-AS1Q6ZSK4 140 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 ATP6V0E2Q8NHE4 81 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 TMEM243Q9BU79 118 aa8.19□□□□□ -1.1
USP54-209ENST00000464635 DNAH6Q9C0G6 4158 aa8.18□□□□□ -1.1
USP54-209ENST00000464635 A0A1B0GUV1 79 aa8.18□□□□□ -1.1
USP54-209ENST00000464635 H0Y8G0 127 aa8.18□□□□□ -1.1
USP54-209ENST00000464635 SIVA1O15304 175 aa8.18□□□□□ -1.1
USP54-209ENST00000464635 SEC11AP67812 179 aa8.18□□□□□ -1.1
USP54-209ENST00000464635 MRPL23Q16540 153 aaKnown RBP8.18□□□□□ -1.1
USP54-209ENST00000464635 TRAV10A0A0B4J240 114 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 COX8AP10176 69 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 GYPEP15421 78 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 C12orf74Q32Q52 190 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 ATOH7Q8N100 152 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 FAM104AQ969W3 186 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 VSIG2Q96IQ7 327 aa8.17□□□□□ -1.1
USP54-209ENST00000464635 MRPS16Q9Y3D3 137 aaKnown RBP8.17□□□□□ -1.1
USP54-209ENST00000464635 IGLV4-69A0A075B6H9 119 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 IGHV3-38A0A0C4DH36 116 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 C11orf86A6NJI1 115 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 ZC2HC1BQ5TFG8 222 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 DGAT2L7PQ6IED9 249 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 SLC25A34Q6PIV7 304 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 C2orf88Q9BSF0 95 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 PRO1933Q9H354 126 aa8.16□□□□□ -1.1
USP54-209ENST00000464635 TINCRA0A1B0GVN0 87 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 hDV102S1A0JD36 115 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 PCP4L1A6NKN8 68 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 UBE2L6O14933 153 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 CCL25O15444 150 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 FGF6P10767 208 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 TCTAP57738 103 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 LBHQ53QV2 105 aaPredicted RBP8.15□□□□□ -1.1
USP54-209ENST00000464635 BOD1L2Q8IYS8 172 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 TMEM101Q96IK0 257 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 CDC42SE2Q9NRR3 84 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 ICOSQ9Y6W8 199 aa8.15□□□□□ -1.1
USP54-209ENST00000464635 DEFB131BA0A096LNP1 70 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 LOC100131303A0A0U1RQF7 123 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 E9PLD3 99 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 F5H768 121 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 HERVK_113P61574 105 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 MAJINQ3KP22 176 aa8.14□□□□□ -1.11
USP54-209ENST00000464635 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.13□□□□□ -1.11
USP54-209ENST00000464635 IGLV5-45A0A087WSX0 123 aa8.13□□□□□ -1.11
USP54-209ENST00000464635 IGKV2-29A2NJV5 120 aaPredicted RBP8.13□□□□□ -1.11
USP54-209ENST00000464635 STPG4Q8N801 248 aa8.13□□□□□ -1.11
USP54-209ENST00000464635 OR5A1Q8NGJ0 315 aa8.13□□□□□ -1.11
USP54-209ENST00000464635 UBE2D1P51668 147 aa8.12□□□□□ -1.11
USP54-209ENST00000464635 ANKRD39Q53RE8 183 aa8.12□□□□□ -1.11
USP54-209ENST00000464635 LELP1Q5T871 98 aa8.12□□□□□ -1.11
USP54-209ENST00000464635 AMMECR1LQ6DCA0 310 aa8.12□□□□□ -1.11
USP54-209ENST00000464635 HIGD1BQ9P298 99 aa8.12□□□□□ -1.11
USP54-209ENST00000464635 LINC00587B1AMM8 73 aa8.11□□□□□ -1.11
USP54-209ENST00000464635 HERVK_113P63121 156 aa8.11□□□□□ -1.11
USP54-209ENST00000464635 C14orf144Q96I85 54 aa8.11□□□□□ -1.11
USP54-209ENST00000464635 A0A096LPF7 62 aa8.1□□□□□ -1.11
USP54-209ENST00000464635 OPRPNQ99935 248 aaPredicted RBP8.1□□□□□ -1.11
USP54-209ENST00000464635 HERC2O95714 4834 aa8.1□□□□□ -1.11
USP54-209ENST00000464635 TMEM223A0PJW6 202 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 ZNF22P17026 224 aaPredicted RBP8.09□□□□□ -1.11
USP54-209ENST00000464635 HNRNPA3P51991 378 aaKnown RBP8.09□□□□□ -1.11
USP54-209ENST00000464635 Q6ZUT4 128 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 C15orf53Q8NAA6 179 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 DEFB104AQ8WTQ1 72 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 CHCHD5Q9BSY4 110 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 CHAC1Q9BUX1 264 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 HECTD4Q9Y4D8 3996 aa8.09□□□□□ -1.11
USP54-209ENST00000464635 DNAH2Q9P225 4427 aa8.09□□□□□ -1.12
USP54-209ENST00000464635 KIAA1109Q2LD37 5005 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms