RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ODF1Q14990 250 aa10.07□□□□□ -0.8
COL7A1-204ENST00000462475 OR5A1Q8NGJ0 315 aa10.07□□□□□ -0.8
COL7A1-204ENST00000462475 LINC00526Q96FQ7 95 aa10.07□□□□□ -0.8
COL7A1-204ENST00000462475 F8W036 122 aa10.06□□□□□ -0.8
COL7A1-204ENST00000462475 CCL25O15444 150 aa10.06□□□□□ -0.8
COL7A1-204ENST00000462475 ZNF25P17030 456 aaPredicted RBP10.06□□□□□ -0.8
COL7A1-204ENST00000462475 C10orf91Q5T1B1 145 aa10.06□□□□□ -0.8
COL7A1-204ENST00000462475 LINC01600Q96MT4 127 aa10.06□□□□□ -0.8
COL7A1-204ENST00000462475 SEC11CQ9BY50 192 aa10.06□□□□□ -0.8
COL7A1-204ENST00000462475 TRBV6-5A0A0K0K1A5 114 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 LINC00959A0A1B0GUT2 108 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 C9JQL5 133 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 I3L3M4 83 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 GATCO43716 136 aaKnown RBP10.05□□□□□ -0.8
COL7A1-204ENST00000462475 ESDP10768 282 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 PMCHP20382 165 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 TMEM242Q9NWH2 141 aa10.05□□□□□ -0.8
COL7A1-204ENST00000462475 TSHBP01222 138 aa10.04□□□□□ -0.8
COL7A1-204ENST00000462475 SRP19P09132 144 aaKnown RBP10.04□□□□□ -0.8
COL7A1-204ENST00000462475 TMEM101Q96IK0 257 aa10.04□□□□□ -0.8
COL7A1-204ENST00000462475 BTF3L4Q96K17 158 aa10.04□□□□□ -0.8
COL7A1-204ENST00000462475 CARD19Q96LW7 228 aa10.04□□□□□ -0.8
COL7A1-204ENST00000462475 CARHSP1Q9Y2V2 147 aaKnown RBP10.04□□□□□ -0.8
COL7A1-204ENST00000462475 IGHV1-58A0A0C4DH39 117 aa10.03□□□□□ -0.8
COL7A1-204ENST00000462475 APOC3P02656 99 aa10.03□□□□□ -0.8
COL7A1-204ENST00000462475 ADCYAP1P18509 176 aa10.03□□□□□ -0.8
COL7A1-204ENST00000462475 FAM231DQ6ZW35 169 aa10.03□□□□□ -0.8
COL7A1-204ENST00000462475 A8MWL6 223 aa10.02□□□□□ -0.81
COL7A1-204ENST00000462475 TMEM250H0YL14 139 aa10.02□□□□□ -0.81
COL7A1-204ENST00000462475 MRAP2Q96G30 205 aa10.02□□□□□ -0.81
COL7A1-204ENST00000462475 ST20Q9HBF5 79 aa10.02□□□□□ -0.81
COL7A1-204ENST00000462475 LINC00474Q9P2X8 69 aa10.02□□□□□ -0.81
COL7A1-204ENST00000462475 CT83Q5H943 113 aa10.01□□□□□ -0.81
COL7A1-204ENST00000462475 SVBPQ8N300 66 aa10.01□□□□□ -0.81
COL7A1-204ENST00000462475 A0A0J9YXV3 536 aa10□□□□□ -0.81
COL7A1-204ENST00000462475 CEBPGP53567 150 aa10□□□□□ -0.81
COL7A1-204ENST00000462475 CD164L2Q6UWJ8 174 aa10□□□□□ -0.81
COL7A1-204ENST00000462475 MRPL52Q86TS9 123 aaKnown RBP10□□□□□ -0.81
COL7A1-204ENST00000462475 CDC42SE2Q9NRR3 84 aa10□□□□□ -0.81
COL7A1-204ENST00000462475 PKIGQ9Y2B9 76 aa10□□□□□ -0.81
COL7A1-204ENST00000462475 POLR2KP53803 58 aaKnown RBP9.99□□□□□ -0.81
COL7A1-204ENST00000462475 SYCNQ0VAF6 134 aa9.99□□□□□ -0.81
COL7A1-204ENST00000462475 SS18Q15532 418 aa9.99□□□□□ -0.81
COL7A1-204ENST00000462475 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
COL7A1-204ENST00000462475 BORCS7Q96B45 105 aa9.99□□□□□ -0.81
COL7A1-204ENST00000462475 TRBV27A0A0K0K1C4 114 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 A0A1B0GUT8 65 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 C7orf77A4D0Y5 90 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 HIGD1CA8MV81 97 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 ZNF561-AS1K7EIQ3 104 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 SNAPINO95295 136 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 KRTAP10-8P60410 259 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 ZNF664Q8N3J9 261 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 TMEM191AQ9H0A3 160 aa9.98□□□□□ -0.81
COL7A1-204ENST00000462475 RAB4AP20338 218 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 CAMPP49913 170 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 PTTG1IPP53801 180 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 REG3GQ6UW15 175 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 AMN1Q8IY45 258 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 TSKUQ8WUA8 353 aa9.97□□□□□ -0.81
COL7A1-204ENST00000462475 SMKR1H3BMG3 65 aa9.96□□□□□ -0.82
COL7A1-204ENST00000462475 SRSF9Q13242 221 aaKnown RBP eCLIP9.96□□□□□ -0.82
COL7A1-204ENST00000462475 FAM74A3Q4VXF1 159 aa9.96□□□□□ -0.82
COL7A1-204ENST00000462475 Q6ZRP5 223 aa9.96□□□□□ -0.82
COL7A1-204ENST00000462475 LINC01551Q86U37 167 aa9.96□□□□□ -0.82
COL7A1-204ENST00000462475 IGLV4-69A0A075B6H9 119 aa9.95□□□□□ -0.82
COL7A1-204ENST00000462475 GAGE2BQ13066 116 aa9.95□□□□□ -0.82
COL7A1-204ENST00000462475 RNASE13Q5GAN3 156 aaKnown RBP9.95□□□□□ -0.82
COL7A1-204ENST00000462475 SMIM7Q9BQ49 75 aa9.95□□□□□ -0.82
COL7A1-204ENST00000462475 LOC107984640A0A0U1RRK4 108 aa9.94□□□□□ -0.82
COL7A1-204ENST00000462475 A0A1W2PNN7 141 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 ZNF727A8MUV8 499 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 COX7A2LO14548 114 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 SCO1O75880 301 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 MALP21145 153 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 FCER1GP30273 86 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 NRACQ8N912 160 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 NUP35Q8NFH5 326 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 ISOC2Q96AB3 205 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 OSTCQ9NRP0 149 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 UBE2D4Q9Y2X8 147 aa9.93□□□□□ -0.82
COL7A1-204ENST00000462475 C1orf196B1AJZ1 125 aa9.92□□□□□ -0.82
COL7A1-204ENST00000462475 VCYO14598 125 aa9.92□□□□□ -0.82
COL7A1-204ENST00000462475 PNRC1Q12796 327 aaPredicted RBP9.92□□□□□ -0.82
COL7A1-204ENST00000462475 NAT8Q9UHE5 227 aa9.92□□□□□ -0.82
COL7A1-204ENST00000462475 TRAV13-1A0A0B4J241 112 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 APOMO95445 188 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 SUMO2P61956 95 aaKnown RBP9.91□□□□□ -0.82
COL7A1-204ENST00000462475 RHEBQ15382 184 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 TMEM241Q24JQ0 296 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 Q6ZUT4 128 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 CAMK2N2Q96S95 79 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 CSDC2Q9Y534 153 aaKnown RBP9.91□□□□□ -0.82
COL7A1-204ENST00000462475 V9GYV3 84 aa9.91□□□□□ -0.82
COL7A1-204ENST00000462475 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.9□□□□□ -0.82
COL7A1-204ENST00000462475 RIGQ13278 110 aa9.9□□□□□ -0.82
COL7A1-204ENST00000462475 C5orf38Q86SI9 138 aa9.9□□□□□ -0.82
COL7A1-204ENST00000462475 RPL18AQ02543 176 aaKnown RBP9.89□□□□□ -0.83
COL7A1-204ENST00000462475 C9orf116Q5BN46 136 aaPredicted RBP9.89□□□□□ -0.83
COL7A1-204ENST00000462475 C2orf48Q96LS8 159 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms