RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IGHV3-64A0A075B6Q5 118 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 IGKV3OR2-268A0A0C4DH90 116 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 PANO1I0J062 215 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 PPP1R17O96001 155 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 TMEM101Q96IK0 257 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 BTF3L4Q96K17 158 aa7.71□□□□□ -1.18
USP40-210ENST00000454354 GVQW2A0A096LPI5 108 aaPredicted RBP7.7□□□□□ -1.18
USP40-210ENST00000454354 A0A1B0GW15 77 aa7.7□□□□□ -1.18
USP40-210ENST00000454354 C7orf77A4D0Y5 90 aa7.7□□□□□ -1.18
USP40-210ENST00000454354 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
USP40-210ENST00000454354 SMKR1H3BMG3 65 aa7.7□□□□□ -1.18
USP40-210ENST00000454354 SUMO2P61956 95 aaKnown RBP7.7□□□□□ -1.18
USP40-210ENST00000454354 FOXI1Q12951 378 aa7.7□□□□□ -1.18
USP40-210ENST00000454354 FAM104BQ5XKR9 115 aa7.7□□□□□ -1.18
USP40-210ENST00000454354 LINC00959A0A1B0GUT2 108 aa7.69□□□□□ -1.18
USP40-210ENST00000454354 VCYO14598 125 aa7.69□□□□□ -1.18
USP40-210ENST00000454354 PPP1R2P9O14990 202 aa7.69□□□□□ -1.18
USP40-210ENST00000454354 MRPL51Q4U2R6 128 aaKnown RBP7.69□□□□□ -1.18
USP40-210ENST00000454354 CDC42SE2Q9NRR3 84 aa7.69□□□□□ -1.18
USP40-210ENST00000454354 LINC00862A6NCI5 91 aa7.68□□□□□ -1.18
USP40-210ENST00000454354 RPL37AP61513 92 aaKnown RBP7.68□□□□□ -1.18
USP40-210ENST00000454354 RPL32P62910 135 aaKnown RBP7.68□□□□□ -1.18
USP40-210ENST00000454354 SPACA4Q8TDM5 124 aa7.68□□□□□ -1.18
USP40-210ENST00000454354 CSDC2Q9Y534 153 aaKnown RBP7.68□□□□□ -1.18
USP40-210ENST00000454354 TRBV24-1A0A075B6N3 115 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 A0A1B0GXF2 115 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 CCL25O15444 150 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 FCER1GP30273 86 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 CAMPP49913 170 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 HIGD2BQ4VC39 106 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 ZNF664Q8N3J9 261 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 KIR2DL4Q99706 377 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 C20orf78Q9BR46 151 aa7.67□□□□□ -1.18
USP40-210ENST00000454354 J3QL48 77 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 S100A8P05109 93 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 XCL1P47992 114 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 HBBP68871 147 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 SMAGPQ0VAQ4 97 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 UBE2D4Q9Y2X8 147 aa7.66□□□□□ -1.18
USP40-210ENST00000454354 IGHV1-58A0A0C4DH39 117 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 TCAPO15273 167 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 CHTF8P0CG12 524 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 CKS2P33552 79 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 SS18Q15532 418 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 CD164L2Q6UWJ8 174 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 TIMM21Q9BVV7 248 aa7.65□□□□□ -1.18
USP40-210ENST00000454354 A0A087WYN8 130 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 F8W036 122 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 TNFRSF6BO95407 300 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 COX6A2Q02221 97 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 MRPL54Q6P161 138 aaKnown RBP7.64□□□□□ -1.19
USP40-210ENST00000454354 ATP5L2Q7Z4Y8 100 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 PLAC8Q9NZF1 115 aa7.64□□□□□ -1.19
USP40-210ENST00000454354 C1orf196B1AJZ1 125 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 D6R8Y8 96 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 PHOX2AO14813 284 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 OXTP01178 125 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 HNRNPA3P51991 378 aaKnown RBP7.63□□□□□ -1.19
USP40-210ENST00000454354 CLLU1Q5K131 121 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 PRSS3P2Q8NHM4 247 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 TMEM18Q96B42 140 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 SMIM2Q9BVW6 85 aa7.63□□□□□ -1.19
USP40-210ENST00000454354 NPYP01303 97 aa7.62□□□□□ -1.19
USP40-210ENST00000454354 PPBPP02775 128 aa7.62□□□□□ -1.19
USP40-210ENST00000454354 PNRC1Q12796 327 aaPredicted RBP7.62□□□□□ -1.19
USP40-210ENST00000454354 Q6ZUT4 128 aa7.62□□□□□ -1.19
USP40-210ENST00000454354 PKIGQ9Y2B9 76 aa7.62□□□□□ -1.19
USP40-210ENST00000454354 IFITM2Q01629 132 aa7.61□□□□□ -1.19
USP40-210ENST00000454354 FAM104AQ969W3 186 aa7.61□□□□□ -1.19
USP40-210ENST00000454354 A0A096LNI7 61 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 COX7A2LO14548 114 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 RPL39P62891 51 aaKnown RBP7.6□□□□□ -1.19
USP40-210ENST00000454354 RNASE13Q5GAN3 156 aaKnown RBP7.6□□□□□ -1.19
USP40-210ENST00000454354 ORMDL3Q8N138 153 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 DPH3Q96FX2 82 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 CARD19Q96LW7 228 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 SPANXA1Q9NS26 97 aa7.6□□□□□ -1.19
USP40-210ENST00000454354 TRAV13-1A0A0B4J241 112 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 IGKV2-24A0A0C4DH68 120 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 MRPS36P82909 103 aaKnown RBP7.59□□□□□ -1.19
USP40-210ENST00000454354 SYCNQ0VAF6 134 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 MAJINQ3KP22 176 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 ANAPC16Q96DE5 110 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 LINC00526Q96FQ7 95 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 LINC00474Q9P2X8 69 aa7.59□□□□□ -1.19
USP40-210ENST00000454354 HMCN2Q8NDA2 5059 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 PRSS47A8MTI9 375 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 MT-ND4LP03901 98 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 MALP21145 153 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 TMEM136Q6ZRR5 245 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 STPG4Q8N801 248 aa7.58□□□□□ -1.2
USP40-210ENST00000454354 IGLV4-69A0A075B6H9 119 aa7.57□□□□□ -1.2
USP40-210ENST00000454354 C7orf33Q8WU49 177 aa7.57□□□□□ -1.2
USP40-210ENST00000454354 C2orf48Q96LS8 159 aa7.57□□□□□ -1.2
USP40-210ENST00000454354 PRELID3AQ96N28 172 aa7.57□□□□□ -1.2
USP40-210ENST00000454354 LAMTOR2Q9Y2Q5 125 aa7.57□□□□□ -1.2
USP40-210ENST00000454354 APOMO95445 188 aa7.56□□□□□ -1.2
USP40-210ENST00000454354 UQCC3Q6UW78 93 aa7.56□□□□□ -1.2
USP40-210ENST00000454354 Q6ZRU5 148 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms