RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LRP2P98164 4655 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 RNF213Q63HN8 5207 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 MALP21145 153 aa8.29□□□□□ -1.08
HMGB3-204ENST00000448905 FOXA3P55318 350 aaPredicted RBP8.29□□□□□ -1.08
HMGB3-204ENST00000448905 KRTAP10-8P60410 259 aa8.29□□□□□ -1.08
HMGB3-204ENST00000448905 SLC51BQ86UW2 128 aa8.29□□□□□ -1.08
HMGB3-204ENST00000448905 FAM231BA6NCW3 169 aa8.28□□□□□ -1.08
HMGB3-204ENST00000448905 C1orf196B1AJZ1 125 aa8.28□□□□□ -1.08
HMGB3-204ENST00000448905 K7EN84 100 aa8.28□□□□□ -1.08
HMGB3-204ENST00000448905 SRSF9Q13242 221 aaKnown RBP eCLIP8.28□□□□□ -1.08
HMGB3-204ENST00000448905 ZNF664Q8N3J9 261 aa8.28□□□□□ -1.08
HMGB3-204ENST00000448905 CDC42SE2Q9NRR3 84 aa8.28□□□□□ -1.08
HMGB3-204ENST00000448905 LOC107984640A0A0U1RRK4 108 aa8.27□□□□□ -1.09
HMGB3-204ENST00000448905 ESDP10768 282 aa8.27□□□□□ -1.09
HMGB3-204ENST00000448905 FAM231DQ6ZW35 169 aa8.27□□□□□ -1.09
HMGB3-204ENST00000448905 MRPL52Q86TS9 123 aaKnown RBP8.27□□□□□ -1.09
HMGB3-204ENST00000448905 LINC00526Q96FQ7 95 aa8.27□□□□□ -1.09
HMGB3-204ENST00000448905 TMEM250H0YL14 139 aa8.26□□□□□ -1.09
HMGB3-204ENST00000448905 VCYO14598 125 aa8.26□□□□□ -1.09
HMGB3-204ENST00000448905 PPP1R17O96001 155 aa8.26□□□□□ -1.09
HMGB3-204ENST00000448905 CAMPP49913 170 aa8.26□□□□□ -1.09
HMGB3-204ENST00000448905 GAGE2BQ13066 116 aa8.26□□□□□ -1.09
HMGB3-204ENST00000448905 IGLV4-69A0A075B6H9 119 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 TRBV27A0A0K0K1C4 114 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 COX7A2LO14548 114 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 TSHBP01222 138 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 FCER1GP30273 86 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 PTTG1IPP53801 180 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 CT83Q5H943 113 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 TMEM242Q9NWH2 141 aa8.25□□□□□ -1.09
HMGB3-204ENST00000448905 A0A1B0GUT8 65 aa8.24□□□□□ -1.09
HMGB3-204ENST00000448905 C7orf77A4D0Y5 90 aa8.24□□□□□ -1.09
HMGB3-204ENST00000448905 POLR2KP53803 58 aaKnown RBP8.24□□□□□ -1.09
HMGB3-204ENST00000448905 BLOC1S1P78537 153 aa8.24□□□□□ -1.09
HMGB3-204ENST00000448905 CAMK2N2Q96S95 79 aa8.24□□□□□ -1.09
HMGB3-204ENST00000448905 TMEM191AQ9H0A3 160 aa8.24□□□□□ -1.09
HMGB3-204ENST00000448905 APOMO95445 188 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 MT-ND6P03923 174 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 RAB4AP20338 218 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 CEBPGP53567 150 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 TMEM18Q96B42 140 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 KIR2DL4Q99706 377 aa8.23□□□□□ -1.09
HMGB3-204ENST00000448905 CSDC2Q9Y534 153 aaKnown RBP8.23□□□□□ -1.09
HMGB3-204ENST00000448905 TSKUQ8WUA8 353 aa8.22□□□□□ -1.09
HMGB3-204ENST00000448905 C2orf48Q96LS8 159 aa8.22□□□□□ -1.09
HMGB3-204ENST00000448905 TNXBP22105 4242 aa8.22□□□□□ -1.09
HMGB3-204ENST00000448905 HIGD1CA8MV81 97 aa8.21□□□□□ -1.1
HMGB3-204ENST00000448905 RIGQ13278 110 aa8.21□□□□□ -1.1
HMGB3-204ENST00000448905 TCTE3Q8IZS6 198 aa8.21□□□□□ -1.1
HMGB3-204ENST00000448905 NUP35Q8NFH5 326 aa8.21□□□□□ -1.1
HMGB3-204ENST00000448905 TRAV13-1A0A0B4J241 112 aa8.2□□□□□ -1.1
HMGB3-204ENST00000448905 GAS8-AS1O95177 125 aa8.2□□□□□ -1.1
HMGB3-204ENST00000448905 EIF5A2Q9GZV4 153 aaKnown RBP8.2□□□□□ -1.1
HMGB3-204ENST00000448905 A0A1W2PNN7 141 aa8.19□□□□□ -1.1
HMGB3-204ENST00000448905 PPP1R2P9O14990 202 aa8.19□□□□□ -1.1
HMGB3-204ENST00000448905 RNF151Q2KHN1 245 aa8.19□□□□□ -1.1
HMGB3-204ENST00000448905 C9orf116Q5BN46 136 aaPredicted RBP8.19□□□□□ -1.1
HMGB3-204ENST00000448905 AMN1Q8IY45 258 aa8.19□□□□□ -1.1
HMGB3-204ENST00000448905 SMIM7Q9BQ49 75 aa8.19□□□□□ -1.1
HMGB3-204ENST00000448905 F8WDY8 70 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 TCAPO15273 167 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 SUMO2P61956 95 aaKnown RBP8.18□□□□□ -1.1
HMGB3-204ENST00000448905 RPL18AQ02543 176 aaKnown RBP8.18□□□□□ -1.1
HMGB3-204ENST00000448905 C1orf137Q5JT78 98 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 C5orf38Q86SI9 138 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 IMMP2LQ96T52 175 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 OSTCQ9NRP0 149 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 PSORS1C2Q9UIG4 136 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 UBE2D4Q9Y2X8 147 aa8.18□□□□□ -1.1
HMGB3-204ENST00000448905 ZNF727A8MUV8 499 aa8.17□□□□□ -1.1
HMGB3-204ENST00000448905 LINC01551Q86U37 167 aa8.17□□□□□ -1.1
HMGB3-204ENST00000448905 OR10D4PQ8NGN7 298 aa8.17□□□□□ -1.1
HMGB3-204ENST00000448905 DIRC1Q969H9 104 aa8.17□□□□□ -1.1
HMGB3-204ENST00000448905 TIMM21Q9BVV7 248 aa8.17□□□□□ -1.1
HMGB3-204ENST00000448905 LINC00862A6NCI5 91 aa8.16□□□□□ -1.1
HMGB3-204ENST00000448905 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-204ENST00000448905 TMEM241Q24JQ0 296 aa8.16□□□□□ -1.1
HMGB3-204ENST00000448905 OPRPNQ99935 248 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-204ENST00000448905 A0A087WZ39 114 aa8.15□□□□□ -1.1
HMGB3-204ENST00000448905 SMKR1H3BMG3 65 aa8.15□□□□□ -1.1
HMGB3-204ENST00000448905 SPAG11BQ08648 103 aa8.15□□□□□ -1.1
HMGB3-204ENST00000448905 RNASE13Q5GAN3 156 aaKnown RBP8.15□□□□□ -1.1
HMGB3-204ENST00000448905 ALKAL2Q6UX46 152 aa8.15□□□□□ -1.1
HMGB3-204ENST00000448905 C20orf78Q9BR46 151 aa8.15□□□□□ -1.1
HMGB3-204ENST00000448905 PHF5AQ7RTV0 110 aaKnown RBP8.14□□□□□ -1.11
HMGB3-204ENST00000448905 MRPL35Q9NZE8 188 aaKnown RBP8.14□□□□□ -1.11
HMGB3-204ENST00000448905 NAT8BQ9UHF3 227 aa8.14□□□□□ -1.11
HMGB3-204ENST00000448905 NDUFA1O15239 70 aa8.13□□□□□ -1.11
HMGB3-204ENST00000448905 CKS2P33552 79 aa8.13□□□□□ -1.11
HMGB3-204ENST00000448905 FAM104BQ5XKR9 115 aa8.13□□□□□ -1.11
HMGB3-204ENST00000448905 NRACQ8N912 160 aa8.13□□□□□ -1.11
HMGB3-204ENST00000448905 A0A1B0GW15 77 aa8.12□□□□□ -1.11
HMGB3-204ENST00000448905 IGLV7-43P04211 117 aa8.12□□□□□ -1.11
HMGB3-204ENST00000448905 FAM74A3Q4VXF1 159 aa8.12□□□□□ -1.11
HMGB3-204ENST00000448905 ORAOV1Q8WV07 137 aa8.12□□□□□ -1.11
HMGB3-204ENST00000448905 TRBV24-1A0A075B6N3 115 aa8.11□□□□□ -1.11
HMGB3-204ENST00000448905 MRPL51Q4U2R6 128 aaKnown RBP8.11□□□□□ -1.11
HMGB3-204ENST00000448905 Q6ZUT4 128 aa8.11□□□□□ -1.11
HMGB3-204ENST00000448905 SPANXA1Q9NS26 97 aa8.11□□□□□ -1.11
HMGB3-204ENST00000448905 V9GYV3 84 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms