RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DAND5Q8N907 189 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 CNFNQ9BYD5 112 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 SND1-IT1Q9HBX3 110 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 LOC100131303A0A0U1RQF7 123 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 MUSTN1Q8IVN3 82 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 PKIGQ9Y2B9 76 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 IGLV4-3A0A075B6K6 122 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 C10orf126Q8N4M7 172 aa5.4□□□□□ -1.54
SYNE1-213ENST00000448038 TINCRA0A1B0GVN0 87 aa5.4□□□□□ -1.55
SYNE1-213ENST00000448038 KPRPQ5T749 579 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-213ENST00000448038 Q8N976 141 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 CFC1BP0CG36 223 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 CFC1P0CG37 223 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 Q6ZVH6 145 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 C1orf158Q8N1D5 194 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 A0A0J9YWU9 116 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 A4D1N5 150 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 GAS8-AS1O95177 125 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 PIK3CD-AS1Q5SR53 167 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 FSHBP01225 129 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 GAGE2BQ13066 116 aa5.39□□□□□ -1.55
SYNE1-213ENST00000448038 CHCHD10Q8WYQ3 142 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-213ENST00000448038 TSHBP01222 138 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 HIGD2BQ4VC39 106 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 RETNQ9HD89 108 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 A0A1W2PPM0 123 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 POLR2KP53803 58 aaKnown RBP5.38□□□□□ -1.55
SYNE1-213ENST00000448038 TMEM126AQ9H061 195 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 CDKN2A-AS1Q9UH64 79 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 NANOS2P60321 138 aaKnown RBP5.38□□□□□ -1.55
SYNE1-213ENST00000448038 RPL32P62910 135 aaKnown RBP5.38□□□□□ -1.55
SYNE1-213ENST00000448038 COX8CQ7Z4L0 72 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 C15orf53Q8NAA6 179 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 TIRAPP58753 221 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 HIGD1BQ9P298 99 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 CRYBA4P53673 196 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 MIR7-3HGQ8N6C7 128 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 RNF183Q96D59 192 aa5.38□□□□□ -1.55
SYNE1-213ENST00000448038 RBX1P62877 108 aa5.37□□□□□ -1.55
SYNE1-213ENST00000448038 CLUHP3Q96NS8 147 aa5.37□□□□□ -1.55
SYNE1-213ENST00000448038 FXYD2P54710 66 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 GAGE2AQ6NT46 116 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 PYGO1Q9Y3Y4 419 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 MGAQ8IWI9 3026 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 K7EP34 96 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 ZNF22P17026 224 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-213ENST00000448038 NFE4Q86UQ8 179 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 XIRP2A4UGR9 3374 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 ETDCA0A1B0GVM5 59 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 H3BMG7 143 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 LELP1Q5T871 98 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 RNASE8Q8TDE3 154 aaKnown RBP5.36□□□□□ -1.55
SYNE1-213ENST00000448038 UBE2D3P61077 147 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 UBE2D2P62837 147 aa5.36□□□□□ -1.55
SYNE1-213ENST00000448038 CARD19Q96LW7 228 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 NCR3O14931 201 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 INAFM2P0DMQ5 153 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 C14orf177Q52M58 125 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 SZT2Q5T011 3432 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 WDFY4Q6ZS81 3184 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 A0A096LNT2 108 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 FHL3Q13643 280 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 KRTAP24-1Q3LI83 254 aa5.35□□□□□ -1.55
SYNE1-213ENST00000448038 TMEM223A0PJW6 202 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 CDK2AP2O75956 126 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 BEAN1Q3B7T3 259 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 ETDBQ3ZM63 59 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 UBE2D4Q9Y2X8 147 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 AGRNO00468 2067 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 A0A0J9YXY3 114 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 F8W1H4 67 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 C21orf62-AS1Q17RA5 79 aa5.34□□□□□ -1.55
SYNE1-213ENST00000448038 IGLV2-18A0A075B6J9 118 aa5.34□□□□□ -1.56
SYNE1-213ENST00000448038 DEFB105AQ8NG35 78 aa5.34□□□□□ -1.56
SYNE1-213ENST00000448038 MIAQ16674 131 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 ZFAND6Q6FIF0 208 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 G3V4G9 280 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 UFSP1Q6NVU6 142 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 IGKV2-24A0A0C4DH68 120 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 H0YGX0 51 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 HIST1H4AP62805 103 aaKnown RBP5.33□□□□□ -1.56
SYNE1-213ENST00000448038 OCIAD2Q56VL3 154 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 SIGMAR1Q99720 223 aa5.33□□□□□ -1.56
SYNE1-213ENST00000448038 Q6ZTC4 211 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 HELZ2Q9BYK8 2649 aaKnown RBP5.32□□□□□ -1.56
SYNE1-213ENST00000448038 MRPS36P82909 103 aaKnown RBP5.32□□□□□ -1.56
SYNE1-213ENST00000448038 FHL2Q14192 279 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 DSCR8Q96T75 97 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 ORMDL1Q9P0S3 153 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 LINC00959A0A1B0GUT2 108 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 BAALC-AS2P0C853 105 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 CD164L2Q6UWJ8 174 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 PPDPFLQ8WWR9 84 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 IGKV2D-26A0A0A0MRZ7 120 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 K7EP13 123 aa5.32□□□□□ -1.56
SYNE1-213ENST00000448038 NPSP0C0P6 89 aa5.31□□□□□ -1.56
SYNE1-213ENST00000448038 M0R2N4 97 aa5.31□□□□□ -1.56
SYNE1-213ENST00000448038 CDC42SE2Q9NRR3 84 aa5.31□□□□□ -1.56
SYNE1-213ENST00000448038 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-213ENST00000448038 A8MZ25 164 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms