RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 I3L3M4 83 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 SCGB1D1O95968 90 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 HTN1P15515 57 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 CRYBA4P53673 196 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 KRTDAPP60985 99 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 SMAGPQ0VAQ4 97 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 LINC01545Q5VT33 79 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 OR4C5Q8NGB2 326 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 TOMM6Q96B49 74 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 TIMM17AQ99595 171 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 APLNQ9ULZ1 77 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 CYSLTR1Q9Y271 337 aa4.88□□□□□ -1.63
VPS13A-201ENST00000355766 TRAV12-1A0A0B4J245 112 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 LOC389332A0A1B0GUA5 103 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 CDK2AP2O75956 126 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 GAS8-AS1O95177 125 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 GATA1P15976 413 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 NANOS2P60321 138 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 KRTAP10-6P60371 365 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 PKIAP61925 76 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 TMEM97Q5BJF2 176 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 PAPPA-AS1Q5QFB9 102 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 DAZ4Q86SG3 579 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 Q8N976 141 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 IFI27L1Q96BM0 104 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 RPL39LQ96EH5 51 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 TMEM141Q96I45 108 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 C11orf68Q9H3H3 251 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 JPT2Q9H910 190 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 DAZ3Q9NR90 486 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 MRPL16Q9NX20 251 aaKnown RBP4.87□□□□□ -1.63
VPS13A-201ENST00000355766 NACAE9PAV3 2078 aa4.87□□□□□ -1.63
VPS13A-201ENST00000355766 LRP1BQ9NZR2 4599 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 APOBP04114 4563 aaKnown RBP4.86□□□□□ -1.63
VPS13A-201ENST00000355766 TRBV7-3A0A075B6L6 115 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 TRGV2A0A075B6R0 118 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 IGHV3OR16-12A0A075B7B8 117 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-201ENST00000355766 K7EQD1 137 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 PLNP26678 52 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 RPL36AP83881 106 aaKnown RBP4.86□□□□□ -1.63
VPS13A-201ENST00000355766 Q6ZTI0 123 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 ERASQ7Z444 233 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 C11orf45Q8TAV5 145 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 VAMP8Q9BV40 100 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 NOP10Q9NPE3 64 aaKnown RBP4.86□□□□□ -1.63
VPS13A-201ENST00000355766 PYGO1Q9Y3Y4 419 aa4.86□□□□□ -1.63
VPS13A-201ENST00000355766 TRAV9-2A0A087WT02 112 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 IGLL5B9A064 214 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 HSBP1L1C9JCN9 74 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 H7C423 109 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 LINC00694P0DN24 101 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 C10orf25Q5T742 122 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 C2orf66Q6UXQ4 117 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 MRPL52Q86TS9 123 aaKnown RBP4.85□□□□□ -1.63
VPS13A-201ENST00000355766 Q8NAQ8 132 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 C20orf203Q8NBC4 194 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 PRADC1Q9BSG0 188 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 TIMM21Q9BVV7 248 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 GTSF1LQ9H1H1 148 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 SPANXA1Q9NS26 97 aa4.85□□□□□ -1.63
VPS13A-201ENST00000355766 DMBT1Q9UGM3 2413 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-201ENST00000355766 IGKV2D-30A0A075B6S6 120 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 TRAV26-1A0A087WT03 109 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 IGIPA6NJ69 53 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 TSHBP01222 138 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 UBE2D3P61077 147 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 UBE2D2P62837 147 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 COTL1Q14019 142 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 Q6ZN92 141 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 SH2D6Q7Z4S9 175 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 NEXN-AS1Q8NBZ9 246 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 OR11H2Q8NH07 326 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 SCGB3A1Q96QR1 104 aa4.84□□□□□ -1.63
VPS13A-201ENST00000355766 CSDC2Q9Y534 153 aaKnown RBP4.84□□□□□ -1.63
VPS13A-201ENST00000355766 A0A087WX48 190 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 IGHV4-28A0A0C4DH34 117 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 F8VRH5 84 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 H3BNG1 76 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 SPART-AS1P0CW21 52 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 SLC25A29Q8N8R3 303 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 ZNF479Q96JC4 524 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 PRO0255Q9UI72 69 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 DNAH5Q8TE73 4624 aa4.83□□□□□ -1.64
VPS13A-201ENST00000355766 TRGV4A0A0C4DH28 118 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 C16orf90A8MZG2 172 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 M0R2N4 97 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 GAGE7O76087 117 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 DPM2O94777 84 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 GAGE12FP0CL80 117 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 GAGE12GP0CL81 117 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 GAGE12IP0CL82 117 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 ZNF25P17030 456 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-201ENST00000355766 MRPS36P82909 103 aaKnown RBP4.82□□□□□ -1.64
VPS13A-201ENST00000355766 PMVKQ15126 192 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 KRTAP5-11Q6L8G4 156 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 LINC00173Q6ZV60 143 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 ZNF664Q8N3J9 261 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 PMCHL2Q9BQD1 86 aa4.82□□□□□ -1.64
VPS13A-201ENST00000355766 DLEU1O43261 78 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms