RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 H7C423 109 aa13.03□□□□□ -0.32
SYNE2-201ENST00000341472 I3L3M4 83 aa13.03□□□□□ -0.32
SYNE2-201ENST00000341472 APCSP02743 223 aa13.03□□□□□ -0.32
SYNE2-201ENST00000341472 CAMPP49913 170 aa13.03□□□□□ -0.32
SYNE2-201ENST00000341472 RNASEKQ6P5S7 137 aaKnown RBP13.03□□□□□ -0.32
SYNE2-201ENST00000341472 TMEM191AQ9H0A3 160 aa13.03□□□□□ -0.32
SYNE2-201ENST00000341472 hDV102S1A0JD36 115 aa13.02□□□□□ -0.33
SYNE2-201ENST00000341472 YPEL4Q96NS1 127 aa13.02□□□□□ -0.33
SYNE2-201ENST00000341472 ST20Q9HBF5 79 aa13.02□□□□□ -0.33
SYNE2-201ENST00000341472 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-201ENST00000341472 TGIF2-C20orf24A0A0A6YYL0 155 aa13.01□□□□□ -0.33
SYNE2-201ENST00000341472 IGKV3OR2-268A0A0C4DH90 116 aa13.01□□□□□ -0.33
SYNE2-201ENST00000341472 IGKV2-29A2NJV5 120 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-201ENST00000341472 SCO1O75880 301 aa13.01□□□□□ -0.33
SYNE2-201ENST00000341472 AP5S1Q9NUS5 200 aa13.01□□□□□ -0.33
SYNE2-201ENST00000341472 GAGE12HA6NDE8 117 aa13□□□□□ -0.33
SYNE2-201ENST00000341472 GAS8-AS1O95177 125 aa13□□□□□ -0.33
SYNE2-201ENST00000341472 FGF6P10767 208 aa13□□□□□ -0.33
SYNE2-201ENST00000341472 RAB4AP20338 218 aa13□□□□□ -0.33
SYNE2-201ENST00000341472 CFAP161Q6P656 301 aa13□□□□□ -0.33
SYNE2-201ENST00000341472 CNBPP62633 177 aaKnown RBP12.99□□□□□ -0.33
SYNE2-201ENST00000341472 SDIM1Q6ZPB5 146 aa12.99□□□□□ -0.33
SYNE2-201ENST00000341472 MRAP2Q96G30 205 aa12.99□□□□□ -0.33
SYNE2-201ENST00000341472 RNF185Q96GF1 192 aa12.99□□□□□ -0.33
SYNE2-201ENST00000341472 GNB1LQ9BYB4 327 aa12.99□□□□□ -0.33
SYNE2-201ENST00000341472 MT-ND6P03923 174 aa12.98□□□□□ -0.33
SYNE2-201ENST00000341472 AMN1Q8IY45 258 aa12.98□□□□□ -0.33
SYNE2-201ENST00000341472 FAM104BQ5XKR9 115 aa12.97□□□□□ -0.33
SYNE2-201ENST00000341472 TMEM101Q96IK0 257 aa12.97□□□□□ -0.33
SYNE2-201ENST00000341472 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.96□□□□□ -0.33
SYNE2-201ENST00000341472 COLCA2A8K830 154 aa12.96□□□□□ -0.33
SYNE2-201ENST00000341472 TSHBP01222 138 aa12.96□□□□□ -0.33
SYNE2-201ENST00000341472 ESDP10768 282 aa12.96□□□□□ -0.33
SYNE2-201ENST00000341472 ZNF25P17030 456 aaPredicted RBP12.96□□□□□ -0.33
SYNE2-201ENST00000341472 RPS10P46783 165 aaKnown RBP12.96□□□□□ -0.33
SYNE2-201ENST00000341472 POLR2KP53803 58 aaKnown RBP12.96□□□□□ -0.33
SYNE2-201ENST00000341472 TMEM136Q6ZRR5 245 aa12.96□□□□□ -0.33
SYNE2-201ENST00000341472 CHCHD10Q8WYQ3 142 aaPredicted RBP12.96□□□□□ -0.33
SYNE2-201ENST00000341472 SLPIP03973 132 aa12.95□□□□□ -0.34
SYNE2-201ENST00000341472 IGHV3-64A0A075B6Q5 118 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 TRBV27A0A0K0K1C4 114 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 J3QL48 77 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 VCYO14598 125 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 PPP1R17O96001 155 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 OR5A1Q8NGJ0 315 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 DPH3Q96FX2 82 aa12.94□□□□□ -0.34
SYNE2-201ENST00000341472 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.94□□□□□ -0.34
SYNE2-201ENST00000341472 SMKR1H3BMG3 65 aa12.93□□□□□ -0.34
SYNE2-201ENST00000341472 TRAPPC1Q9Y5R8 145 aa12.93□□□□□ -0.34
SYNE2-201ENST00000341472 PPBPP02775 128 aa12.92□□□□□ -0.34
SYNE2-201ENST00000341472 RAB5AP20339 215 aa12.92□□□□□ -0.34
SYNE2-201ENST00000341472 C15orf56Q8N910 161 aa12.92□□□□□ -0.34
SYNE2-201ENST00000341472 PANO1I0J062 215 aa12.91□□□□□ -0.34
SYNE2-201ENST00000341472 KRTAP10-4P60372 401 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-201ENST00000341472 MRPL51Q4U2R6 128 aaKnown RBP12.91□□□□□ -0.34
SYNE2-201ENST00000341472 MRPL18Q9H0U6 180 aaKnown RBP12.91□□□□□ -0.34
SYNE2-201ENST00000341472 FCER1GP30273 86 aa12.9□□□□□ -0.34
SYNE2-201ENST00000341472 CKS2P33552 79 aa12.9□□□□□ -0.34
SYNE2-201ENST00000341472 FABP9Q0Z7S8 132 aa12.9□□□□□ -0.34
SYNE2-201ENST00000341472 LINC00959A0A1B0GUT2 108 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 XCL1P47992 114 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 RPL37AP61513 92 aaKnown RBP12.89□□□□□ -0.35
SYNE2-201ENST00000341472 SUMO2P61956 95 aaKnown RBP12.89□□□□□ -0.35
SYNE2-201ENST00000341472 FOXI1Q12951 378 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 HIGD2BQ4VC39 106 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 MRPL52Q86TS9 123 aaKnown RBP12.89□□□□□ -0.35
SYNE2-201ENST00000341472 NRACQ8N912 160 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 CDC42SE2Q9NRR3 84 aa12.89□□□□□ -0.35
SYNE2-201ENST00000341472 KRTAP29-1A8MX34 341 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-201ENST00000341472 SS18Q15532 418 aa12.88□□□□□ -0.35
SYNE2-201ENST00000341472 ORMDL3Q8N138 153 aa12.88□□□□□ -0.35
SYNE2-201ENST00000341472 ZNF664Q8N3J9 261 aa12.88□□□□□ -0.35
SYNE2-201ENST00000341472 CCL25O15444 150 aa12.87□□□□□ -0.35
SYNE2-201ENST00000341472 CIRBPQ14011 172 aaKnown RBP12.87□□□□□ -0.35
SYNE2-201ENST00000341472 KIR2DL4Q99706 377 aa12.87□□□□□ -0.35
SYNE2-201ENST00000341472 LAMTOR2Q9Y2Q5 125 aa12.87□□□□□ -0.35
SYNE2-201ENST00000341472 SMAGPQ0VAQ4 97 aa12.86□□□□□ -0.35
SYNE2-201ENST00000341472 GVQW2A0A096LPI5 108 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-201ENST00000341472 D6R8Y8 96 aa12.85□□□□□ -0.35
SYNE2-201ENST00000341472 PHOX2AO14813 284 aa12.85□□□□□ -0.35
SYNE2-201ENST00000341472 PRELID3AQ96N28 172 aa12.85□□□□□ -0.35
SYNE2-201ENST00000341472 C20orf78Q9BR46 151 aa12.85□□□□□ -0.35
SYNE2-201ENST00000341472 CHTF8P0CG12 524 aa12.84□□□□□ -0.35
SYNE2-201ENST00000341472 COX6A2Q02221 97 aa12.84□□□□□ -0.35
SYNE2-201ENST00000341472 KIAA1644Q3SXP7 199 aa12.84□□□□□ -0.35
SYNE2-201ENST00000341472 A0A087WYN8 130 aa12.83□□□□□ -0.36
SYNE2-201ENST00000341472 IGHV1-58A0A0C4DH39 117 aa12.83□□□□□ -0.36
SYNE2-201ENST00000341472 TRGC2P03986 189 aa12.83□□□□□ -0.36
SYNE2-201ENST00000341472 CD164L2Q6UWJ8 174 aa12.83□□□□□ -0.36
SYNE2-201ENST00000341472 CSDC2Q9Y534 153 aaKnown RBP12.83□□□□□ -0.36
SYNE2-201ENST00000341472 TNFRSF6BO95407 300 aa12.82□□□□□ -0.36
SYNE2-201ENST00000341472 SPACA4Q8TDM5 124 aa12.82□□□□□ -0.36
SYNE2-201ENST00000341472 PRSS3P2Q8NHM4 247 aa12.81□□□□□ -0.36
SYNE2-201ENST00000341472 TMEM18Q96B42 140 aa12.81□□□□□ -0.36
SYNE2-201ENST00000341472 ALKBH7Q9BT30 221 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-201ENST00000341472 UBE2D4Q9Y2X8 147 aa12.81□□□□□ -0.36
SYNE2-201ENST00000341472 LRP1Q07954 4544 aaKnown RBP12.8□□□□□ -0.36
SYNE2-201ENST00000341472 C1orf196B1AJZ1 125 aa12.8□□□□□ -0.36
SYNE2-201ENST00000341472 TCAPO15273 167 aa12.8□□□□□ -0.36
SYNE2-201ENST00000341472 OXTP01178 125 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms