RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TRBV6-5A0A0K0K1A5 114 aa8.02□□□□□ -1.13
CD44-203ENST00000278386 LINC00959A0A1B0GUT2 108 aa8.02□□□□□ -1.13
CD44-203ENST00000278386 TSHBP01222 138 aa8.02□□□□□ -1.13
CD44-203ENST00000278386 SS18Q15532 418 aa8.02□□□□□ -1.13
CD44-203ENST00000278386 C7orf77A4D0Y5 90 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 FAM231BA6NCW3 169 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 HIGD1CA8MV81 97 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 GAS8-AS1O95177 125 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 SMIM7Q9BQ49 75 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 LINC00474Q9P2X8 69 aa8.01□□□□□ -1.13
CD44-203ENST00000278386 A0A1B0GUT8 65 aa8□□□□□ -1.13
CD44-203ENST00000278386 ZNF561-AS1K7EIQ3 104 aa8□□□□□ -1.13
CD44-203ENST00000278386 ESDP10768 282 aa8□□□□□ -1.13
CD44-203ENST00000278386 EIF5A2Q9GZV4 153 aaKnown RBP8□□□□□ -1.13
CD44-203ENST00000278386 TMEM191AQ9H0A3 160 aa8□□□□□ -1.13
CD44-203ENST00000278386 FCER1GP30273 86 aa7.99□□□□□ -1.13
CD44-203ENST00000278386 AMN1Q8IY45 258 aa7.99□□□□□ -1.13
CD44-203ENST00000278386 TSKUQ8WUA8 353 aa7.99□□□□□ -1.13
CD44-203ENST00000278386 FAM210AQ96ND0 272 aa7.99□□□□□ -1.13
CD44-203ENST00000278386 ZNF727A8MUV8 499 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 SMKR1H3BMG3 65 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 SRP19P09132 144 aaKnown RBP7.98□□□□□ -1.13
CD44-203ENST00000278386 MALP21145 153 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 CAMPP49913 170 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 SYCNQ0VAF6 134 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 CD164L2Q6UWJ8 174 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 MRPL52Q86TS9 123 aaKnown RBP7.98□□□□□ -1.13
CD44-203ENST00000278386 LINC01551Q86U37 167 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 ZNF664Q8N3J9 261 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 ISOC2Q96AB3 205 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 CDC42SE2Q9NRR3 84 aa7.98□□□□□ -1.13
CD44-203ENST00000278386 TRBV27A0A0K0K1C4 114 aa7.97□□□□□ -1.13
CD44-203ENST00000278386 RAB4AP20338 218 aa7.97□□□□□ -1.13
CD44-203ENST00000278386 POLR2KP53803 58 aaKnown RBP7.97□□□□□ -1.13
CD44-203ENST00000278386 SMAGPQ0VAQ4 97 aa7.97□□□□□ -1.13
CD44-203ENST00000278386 RNASE13Q5GAN3 156 aaKnown RBP7.97□□□□□ -1.13
CD44-203ENST00000278386 C9JQL5 133 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 SRSF3P84103 164 aaKnown RBP7.96□□□□□ -1.14
CD44-203ENST00000278386 GAGE2BQ13066 116 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 RIGQ13278 110 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 REG3GQ6UW15 175 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 LINC01600Q96MT4 127 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 OSTCQ9NRP0 149 aa7.96□□□□□ -1.14
CD44-203ENST00000278386 IGLV4-69A0A075B6H9 119 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 LOC107984640A0A0U1RRK4 108 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 C1orf196B1AJZ1 125 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 COX7A2LO14548 114 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 PTTG1IPP53801 180 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 Q6ZRP5 223 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 KIR2DL4Q99706 377 aa7.95□□□□□ -1.14
CD44-203ENST00000278386 LRP2P98164 4655 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 TRAV13-1A0A0B4J241 112 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 VCYO14598 125 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 PPP1R17O96001 155 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 SUMO2P61956 95 aaKnown RBP7.94□□□□□ -1.14
CD44-203ENST00000278386 ODF1Q14990 250 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 SPINK6Q6UWN8 80 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 Q6ZUT4 128 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 NUP35Q8NFH5 326 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 CAMK2N2Q96S95 79 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 UBE2D4Q9Y2X8 147 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 V9GYV3 84 aa7.94□□□□□ -1.14
CD44-203ENST00000278386 A0A0J9YXV3 536 aa7.93□□□□□ -1.14
CD44-203ENST00000278386 PPP1R2P9O14990 202 aa7.93□□□□□ -1.14
CD44-203ENST00000278386 RPL18AQ02543 176 aaKnown RBP7.93□□□□□ -1.14
CD44-203ENST00000278386 NRACQ8N912 160 aa7.93□□□□□ -1.14
CD44-203ENST00000278386 TMEM18Q96B42 140 aa7.93□□□□□ -1.14
CD44-203ENST00000278386 ADIRFQ15847 76 aa7.92□□□□□ -1.14
CD44-203ENST00000278386 C5orf38Q86SI9 138 aa7.92□□□□□ -1.14
CD44-203ENST00000278386 NAT8BQ9UHF3 227 aa7.92□□□□□ -1.14
CD44-203ENST00000278386 APOMO95445 188 aa7.91□□□□□ -1.14
CD44-203ENST00000278386 SPAG11BQ08648 103 aa7.91□□□□□ -1.14
CD44-203ENST00000278386 MRPL51Q4U2R6 128 aaKnown RBP7.91□□□□□ -1.14
CD44-203ENST00000278386 CSDC2Q9Y534 153 aaKnown RBP7.91□□□□□ -1.14
CD44-203ENST00000278386 C2orf48Q96LS8 159 aa7.9□□□□□ -1.14
CD44-203ENST00000278386 A0A1W2PNN7 141 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.89□□□□□ -1.15
CD44-203ENST00000278386 MT-ND6P03923 174 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 CKS2P33552 79 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 RPL23P62829 140 aaKnown RBP7.89□□□□□ -1.15
CD44-203ENST00000278386 TMEM241Q24JQ0 296 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 C9orf116Q5BN46 136 aaPredicted RBP7.89□□□□□ -1.15
CD44-203ENST00000278386 FAM104BQ5XKR9 115 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 RNF213Q63HN8 5207 aa7.89□□□□□ -1.15
CD44-203ENST00000278386 RPL39P62891 51 aaKnown RBP7.88□□□□□ -1.15
CD44-203ENST00000278386 FAM74A3Q4VXF1 159 aa7.88□□□□□ -1.15
CD44-203ENST00000278386 ORAOV1Q8WV07 137 aa7.88□□□□□ -1.15
CD44-203ENST00000278386 OPRPNQ99935 248 aaPredicted RBP7.88□□□□□ -1.15
CD44-203ENST00000278386 TIMM21Q9BVV7 248 aa7.88□□□□□ -1.15
CD44-203ENST00000278386 LINC00862A6NCI5 91 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 TCAPO15273 167 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 SRSF9Q13242 221 aaKnown RBP eCLIP7.87□□□□□ -1.15
CD44-203ENST00000278386 OR10D4PQ8NGN7 298 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 C20orf78Q9BR46 151 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 SMIM2Q9BVW6 85 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 NAT8Q9UHE5 227 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 PSORS1C2Q9UIG4 136 aa7.87□□□□□ -1.15
CD44-203ENST00000278386 A0A1B0GW15 77 aa7.86□□□□□ -1.15
CD44-203ENST00000278386 SMIM27A0A1W2PRY6 76 aa7.86□□□□□ -1.15
CD44-203ENST00000278386 D6R8Y8 96 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms