RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 BAALC-AS2P0C853 105 aa12.06□□□□□ -0.48
CTCF-201ENST00000264010 PAX4O43316 350 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 NXPH4O95158 308 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 LINC00158P58513 81 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 PRIMA1Q86XR5 153 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 ZMAT4Q9H898 229 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 EPG5Q9HCE0 2579 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 Q6ZSV7 163 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 HHLA3Q9XRX5 114 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 C11orf86A6NJI1 115 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 SDIM1Q6ZPB5 146 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 MAP6D1Q9H9H5 199 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 TRAV25A0A0B4J276 109 aa12.05□□□□□ -0.48
CTCF-201ENST00000264010 PHLDA1Q8WV24 401 aaPredicted RBP12.05□□□□□ -0.48
CTCF-201ENST00000264010 DEFB114Q30KQ6 69 aa12.04□□□□□ -0.48
CTCF-201ENST00000264010 CSDC2Q9Y534 153 aaKnown RBP12.04□□□□□ -0.48
CTCF-201ENST00000264010 POLR2KP53803 58 aaKnown RBP12.04□□□□□ -0.48
CTCF-201ENST00000264010 TRBV6-5A0A0K0K1A5 114 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 UQCRQO14949 82 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1BA6NDE4 496 aaKnown RBP12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1EA6NEQ0 496 aaKnown RBP12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1DP0C7P1 496 aaKnown RBP12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1A1P0DJD3 496 aaKnown RBP12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1CP0DJD4 496 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 RBMY1FQ15415 496 aaKnown RBP12.03□□□□□ -0.48
CTCF-201ENST00000264010 TRGV2A0A075B6R0 118 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 A0A096LNT2 108 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 TRBV10-2A0A0K0K1G8 114 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 CRPP02741 224 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 INAFM2P0DMQ5 153 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 C20orf197Q8N268 126 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 NOTCH2Q04721 2471 aa12.03□□□□□ -0.48
CTCF-201ENST00000264010 A0A0J9YXV3 536 aa12.02□□□□□ -0.48
CTCF-201ENST00000264010 M0QY20 66 aa12.02□□□□□ -0.48
CTCF-201ENST00000264010 FSHBP01225 129 aa12.02□□□□□ -0.49
CTCF-201ENST00000264010 OPRPNQ99935 248 aaPredicted RBP12.02□□□□□ -0.49
CTCF-201ENST00000264010 TRBV27A0A0K0K1C4 114 aa12.02□□□□□ -0.49
CTCF-201ENST00000264010 UBE2L6O14933 153 aa12.02□□□□□ -0.49
CTCF-201ENST00000264010 RPL36AP83881 106 aaKnown RBP12.02□□□□□ -0.49
CTCF-201ENST00000264010 ZNF575Q86XF7 245 aa12.02□□□□□ -0.49
CTCF-201ENST00000264010 RPL36ALQ969Q0 106 aaKnown RBP12.02□□□□□ -0.49
CTCF-201ENST00000264010 C3orf22Q8N5N4 141 aa12.01□□□□□ -0.49
CTCF-201ENST00000264010 ATOX1O00244 68 aa12.01□□□□□ -0.49
CTCF-201ENST00000264010 ICOSQ9Y6W8 199 aa12.01□□□□□ -0.49
CTCF-201ENST00000264010 FN1P02751 2386 aaKnown RBP12.01□□□□□ -0.49
CTCF-201ENST00000264010 CRYGDP07320 174 aa12.01□□□□□ -0.49
CTCF-201ENST00000264010 MPLKIPQ8TAP9 179 aa12□□□□□ -0.49
CTCF-201ENST00000264010 RPL35AP18077 110 aaKnown RBP12□□□□□ -0.49
CTCF-201ENST00000264010 C20orf203Q8NBC4 194 aa12□□□□□ -0.49
CTCF-201ENST00000264010 IGHV3-53P01767 116 aa12□□□□□ -0.49
CTCF-201ENST00000264010 COPS9Q8WXC6 57 aa12□□□□□ -0.49
CTCF-201ENST00000264010 ZNF22P17026 224 aaPredicted RBP11.99□□□□□ -0.49
CTCF-201ENST00000264010 DNAJC30Q96LL9 226 aa11.99□□□□□ -0.49
CTCF-201ENST00000264010 LAMTOR3Q9UHA4 124 aa11.99□□□□□ -0.49
CTCF-201ENST00000264010 KIF25-AS1Q9Y6Z4 181 aa11.99□□□□□ -0.49
CTCF-201ENST00000264010 Q9HAA7 133 aa11.99□□□□□ -0.49
CTCF-201ENST00000264010 TRAV23DV6A0A075B6W5 121 aa11.98□□□□□ -0.49
CTCF-201ENST00000264010 HIST2H2BCQ6DN03 193 aa11.98□□□□□ -0.49
CTCF-201ENST00000264010 Q8N2B8 174 aa11.98□□□□□ -0.49
CTCF-201ENST00000264010 IGHV3-38A0A0C4DH36 116 aa11.97□□□□□ -0.49
CTCF-201ENST00000264010 HRNRQ86YZ3 2850 aaPredicted RBP11.97□□□□□ -0.49
CTCF-201ENST00000264010 IGSF10Q6WRI0 2623 aa11.96□□□□□ -0.49
CTCF-201ENST00000264010 ZNRF2Q8NHG8 242 aa11.96□□□□□ -0.49
CTCF-201ENST00000264010 HIVEP2P31629 2446 aa11.96□□□□□ -0.5
CTCF-201ENST00000264010 PFN2P35080 140 aa11.96□□□□□ -0.5
CTCF-201ENST00000264010 HIST2H2BDQ6DRA6 164 aa11.96□□□□□ -0.5
CTCF-201ENST00000264010 TRGV4A0A0C4DH28 118 aa11.95□□□□□ -0.5
CTCF-201ENST00000264010 LINC00315P59091 139 aa11.95□□□□□ -0.5
CTCF-201ENST00000264010 V9GYY9 64 aa11.95□□□□□ -0.5
CTCF-201ENST00000264010 CENPEQ02224 2701 aa11.95□□□□□ -0.5
CTCF-201ENST00000264010 DAD1P61803 113 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 A0A0B4J2C4 111 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 IGIPA6NJ69 53 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 LEPROTO15243 131 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 P0DMU3 169 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 FAM231AP0DMU4 169 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 FAM231CP0DMU5 169 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 POM121L12Q8N7R1 296 aa11.94□□□□□ -0.5
CTCF-201ENST00000264010 CRYBG3Q68DQ2 2970 aa11.93□□□□□ -0.5
CTCF-201ENST00000264010 TRIAP1O43715 76 aa11.93□□□□□ -0.5
CTCF-201ENST00000264010 TSHBP01222 138 aa11.92□□□□□ -0.5
CTCF-201ENST00000264010 LINC00643Q86TS7 51 aa11.92□□□□□ -0.5
CTCF-201ENST00000264010 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.92□□□□□ -0.5
CTCF-201ENST00000264010 IGKV2-29A2NJV5 120 aaPredicted RBP11.92□□□□□ -0.5
CTCF-201ENST00000264010 A0A0J9YY99 117 aa11.92□□□□□ -0.5
CTCF-201ENST00000264010 C14orf132Q9NPU4 83 aa11.91□□□□□ -0.5
CTCF-201ENST00000264010 TRBV7-3A0A075B6L6 115 aa11.91□□□□□ -0.5
CTCF-201ENST00000264010 PIK3CD-AS1Q5SR53 167 aa11.91□□□□□ -0.5
CTCF-201ENST00000264010 PROK1P58294 105 aa11.91□□□□□ -0.5
CTCF-201ENST00000264010 GHRHP01286 108 aa11.9□□□□□ -0.5
CTCF-201ENST00000264010 SMCPP49901 116 aaPredicted RBP11.9□□□□□ -0.5
CTCF-201ENST00000264010 UBL5Q9BZL1 73 aa11.9□□□□□ -0.5
CTCF-201ENST00000264010 IGHV3-33P01772 117 aa11.9□□□□□ -0.5
CTCF-201ENST00000264010 PRM2P04554 102 aa11.9□□□□□ -0.5
CTCF-201ENST00000264010 NOP10Q9NPE3 64 aaKnown RBP11.9□□□□□ -0.5
CTCF-201ENST00000264010 H3BT86 120 aa11.89□□□□□ -0.51
CTCF-201ENST00000264010 LINC01006Q8NI28 216 aa11.89□□□□□ -0.51
CTCF-201ENST00000264010 FLNCQ14315 2725 aa11.89□□□□□ -0.51
CTCF-201ENST00000264010 IGLV4-3A0A075B6K6 122 aa11.89□□□□□ -0.51
CTCF-201ENST00000264010 ACYP1P07311 99 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms