RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 PPP2R2CQ9Y2T4 447 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 USP42Q9H9J4 1324 aaKnown RBP7.76□□□□□ -1.17
SCN1A-213ENST00000636759 DCCP43146 1447 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 ABCC6O95255 1503 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 ARHGAP6O43182 974 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 PPP1R12BO60237 982 aaPredicted RBP7.76□□□□□ -1.17
SCN1A-213ENST00000636759 NLRP6P59044 892 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 POLA2Q14181 598 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 LMBR1Q8WVP7 490 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 TTC14Q96N46 770 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 WDR24Q96S15 920 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 G3BP2Q9UN86 482 aaKnown RBP7.76□□□□□ -1.17
SCN1A-213ENST00000636759 AOX1Q06278 1338 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 CTAGE15A4D2H0 777 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 CTAGE8P0CG41 777 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 MCM3P25205 808 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 MAGEA8P43361 318 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 RAB27AP51159 221 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 CTAGE6Q86UF2 777 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 CTAGE4Q8IX94 777 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 DDX20Q9UHI6 824 aaKnown RBP7.76□□□□□ -1.17
SCN1A-213ENST00000636759 C1orf167Q5SNV9 1468 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 A6NNZ2 444 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 CHMLP26374 656 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 LAMB3Q13751 1172 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC96Q2M329 555 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 TUBB8Q3ZCM7 444 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 SLC30A9Q6PML9 568 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 MSANTD4Q8NCY6 345 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 PI4K2BQ8TCG2 481 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 SDF4Q9BRK5 362 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 TJP1Q07157 1748 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 NUP188Q5SRE5 1749 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 STRCQ7RTU9 1775 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 CBFA2T2O43439 604 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 CUTAO60888 179 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 ECEL1O95672 775 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 PYGLP06737 847 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 STIM1Q13586 685 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 TBC1D25Q3MII6 688 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 MYSM1Q5VVJ2 828 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 PARP9Q8IXQ6 854 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 ABTB2Q8N961 1025 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 IP6K1Q92551 441 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 OSBPL9Q96SU4 736 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 PNKPQ96T60 521 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 ANKZF1Q9H8Y5 726 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 VIPAS39Q9H9C1 493 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 JCADQ9P266 1359 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 HEG1Q9ULI3 1381 aa7.75□□□□□ -1.17
SCN1A-213ENST00000636759 VWA3AA6NCI4 1184 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 GOLGA6L10A6NI86 522 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 EIF3HO15372 352 aaKnown RBP eCLIP7.74□□□□□ -1.177e-7■■■■□ 21
SCN1A-213ENST00000636759 TOP1P11387 765 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 FNTAP49354 379 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 VSNL1P62760 191 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 AKAP17AQ02040 695 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 ST3GAL1Q11201 340 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 RUFY3Q7L099 469 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 DHX40Q8IX18 779 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 YIPF3Q9GZM5 350 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 BABAM1Q9NWV8 329 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CDHR2Q9BYE9 1310 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 KIF5CO60282 957 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 TUBB2AQ13885 445 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 B4GALNT2Q8NHY0 566 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 SMARCC2Q8TAQ2 1214 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 HOOK2Q96ED9 719 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 TUBB2BQ9BVA1 445 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 HOOK1Q9UJC3 728 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CDC23Q9UJX2 597 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 TPCN1Q9ULQ1 816 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 ARFGEF2Q9Y6D5 1785 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 ATXN2Q99700 1313 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 LRRIQ3A6PVS8 624 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 F6X3S4 739 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 SHOX2O60902 331 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 DTNBO60941 627 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 KIF4AO95239 1232 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 SERPINC1P01008 464 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 HSPA4P34932 840 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 AMPHP49418 695 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 ATP8B2P98198 1209 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 KARSQ15046 597 aaKnown RBP7.74□□□□□ -1.17
SCN1A-213ENST00000636759 PLCB4Q15147 1175 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 DBN1Q16643 649 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CFAP100Q494V2 611 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 TSHZ3Q63HK5 1081 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CDC37L1Q7L3B6 337 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 PDILTQ8N807 584 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC148Q8NFR7 591 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 SLC40A1Q9NP59 571 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 CFAP45Q9UL16 551 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 OVOS2A0A0G2JMS6 1433 aa7.74□□□□□ -1.17
SCN1A-213ENST00000636759 BUB1BO60566 1050 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 PIP4K2BP78356 416 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 THEMIS2Q5TEJ8 643 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC121Q6ZUS5 278 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 MAB21L3Q8N8X9 362 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 EZH1Q92800 747 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms