RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 EN2P19622 333 aaPredicted RBP23.42■■□□□ 1.34
CDX1-202ENST00000616154 YTHDC1Q96MU7 727 aaKnown RBP23.42■■□□□ 1.34
CDX1-202ENST00000616154 TMEM106CQ9BVX2 250 aa23.42■■□□□ 1.34
CDX1-202ENST00000616154 DOCK1Q14185 1865 aa23.42■■□□□ 1.34
CDX1-202ENST00000616154 PHF20L1A8MW92 1017 aa23.41■■□□□ 1.34
CDX1-202ENST00000616154 PRMT2P55345 433 aa23.41■■□□□ 1.34
CDX1-202ENST00000616154 MROH7-TTC4A0A0A0MT08 1334 aa23.41■■□□□ 1.34
CDX1-202ENST00000616154 CXCL11O14625 94 aa23.4■■□□□ 1.34
CDX1-202ENST00000616154 MAP3K10Q02779 954 aa23.4■■□□□ 1.34
CDX1-202ENST00000616154 SH3BP5LQ7L8J4 393 aa23.4■■□□□ 1.34
CDX1-202ENST00000616154 CPA4Q9UI42 421 aa23.4■■□□□ 1.34
CDX1-202ENST00000616154 PHIPQ8WWQ0 1821 aa23.4■■□□□ 1.34
CDX1-202ENST00000616154 GNAI2P04899 355 aa23.39■■□□□ 1.34
CDX1-202ENST00000616154 BTDP43251 543 aa23.39■■□□□ 1.34
CDX1-202ENST00000616154 SCYL3Q8IZE3 742 aa23.39■■□□□ 1.34
CDX1-202ENST00000616154 CLUAP1Q96AJ1 413 aa23.39■■□□□ 1.34
CDX1-202ENST00000616154 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.39■■□□□ 1.34
CDX1-202ENST00000616154 MGAMO43451 1857 aa23.39■■□□□ 1.33
CDX1-202ENST00000616154 ERICH6Q7L0X2 663 aa23.38■■□□□ 1.33
CDX1-202ENST00000616154 TMEM57Q8N5G2 664 aa23.38■■□□□ 1.33
CDX1-202ENST00000616154 DDX4Q9NQI0 724 aaKnown RBP23.38■■□□□ 1.33
CDX1-202ENST00000616154 GPR75-ASB3A0A0A6YYF3 556 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 DDTLA6NHG4 134 aaPredicted RBP23.37■■□□□ 1.33
CDX1-202ENST00000616154 CTGFP29279 349 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 MECOMQ03112 1051 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 ZSCAN29Q8IWY8 852 aaPredicted RBP23.37■■□□□ 1.33
CDX1-202ENST00000616154 NEUROD6Q96NK8 337 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 PARK7Q99497 189 aaKnown RBP23.37■■□□□ 1.33
CDX1-202ENST00000616154 PICK1Q9NRD5 415 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 HMG20BQ9P0W2 317 aa23.37■■□□□ 1.33
CDX1-202ENST00000616154 PTPRAP18433 802 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 GPAT2Q6NUI2 795 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 SH3TC2Q8TF17 1288 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 ZNF384Q8TF68 577 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 GCC1Q96CN9 775 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 TRIM47Q96LD4 638 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 SRRDQ9UH36 339 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 ZHX2Q9Y6X8 837 aa23.36■■□□□ 1.33
CDX1-202ENST00000616154 A0A0G2JLL6 359 aaPredicted RBP23.35■■□□□ 1.33
CDX1-202ENST00000616154 NPM3O75607 178 aaKnown RBP23.35■■□□□ 1.33
CDX1-202ENST00000616154 ARID4AP29374 1257 aaPredicted RBP23.35■■□□□ 1.33
CDX1-202ENST00000616154 PSMC4P43686 418 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 RHBDL3P58872 404 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 PICALMQ13492 652 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 SLC4A8Q2Y0W8 1093 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 FASTKD5Q7L8L6 764 aaKnown RBP23.35■■□□□ 1.33
CDX1-202ENST00000616154 PRRT2Q7Z6L0 340 aaPredicted RBP23.35■■□□□ 1.33
CDX1-202ENST00000616154 SPATA5Q8NB90 893 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 PCDH10Q9P2E7 1040 aa23.35■■□□□ 1.33
CDX1-202ENST00000616154 PNMA6EA0A0J9YXQ4 647 aa23.34■■□□□ 1.33
CDX1-202ENST00000616154 CTNND1O60716 968 aaKnown RBP23.34■■□□□ 1.33
CDX1-202ENST00000616154 GORABQ5T7V8 394 aa23.34■■□□□ 1.33
CDX1-202ENST00000616154 AFG3L2Q9Y4W6 797 aa23.34■■□□□ 1.33
CDX1-202ENST00000616154 COL2A1P02458 1487 aaPredicted RBP23.34■■□□□ 1.33
CDX1-202ENST00000616154 MAST2Q6P0Q8 1798 aa23.34■■□□□ 1.33
CDX1-202ENST00000616154 MAP4K4O95819 1239 aaPredicted RBP23.33■■□□□ 1.33
CDX1-202ENST00000616154 BCRP11274 1271 aa23.33■■□□□ 1.33
CDX1-202ENST00000616154 RLBP1P12271 317 aa23.33■■□□□ 1.33
CDX1-202ENST00000616154 HOXD10P28358 340 aa23.33■■□□□ 1.33
CDX1-202ENST00000616154 GSTO1P78417 241 aa23.33■■□□□ 1.33
CDX1-202ENST00000616154 G3BP1Q13283 466 aaKnown RBP eCLIP23.33■■□□□ 1.33
CDX1-202ENST00000616154 PI16Q6UXB8 463 aa23.33■■□□□ 1.33
CDX1-202ENST00000616154 NSUN4Q96CB9 384 aaKnown RBP23.33■■□□□ 1.33
CDX1-202ENST00000616154 ATAD5Q96QE3 1844 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 ECM2O94769 699 aaPredicted RBP23.33■■□□□ 1.32
CDX1-202ENST00000616154 FMNL1O95466 1100 aaPredicted RBP23.33■■□□□ 1.32
CDX1-202ENST00000616154 MYCP01106 439 aaPredicted RBP23.33■■□□□ 1.32
CDX1-202ENST00000616154 LDHCP07864 332 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 SLURP2P0DP57 97 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 CYP2C8P10632 490 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 OSBPP22059 807 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 SLC45A1Q9Y2W3 748 aa23.33■■□□□ 1.32
CDX1-202ENST00000616154 TBC1D12O60347 775 aa23.32■■□□□ 1.32
CDX1-202ENST00000616154 TBC1D9Q6ZT07 1266 aa23.32■■□□□ 1.32
CDX1-202ENST00000616154 FTSJ3Q8IY81 847 aaKnown RBP23.32■■□□□ 1.32
CDX1-202ENST00000616154 MYPNQ86TC9 1320 aa23.31■■□□□ 1.32
CDX1-202ENST00000616154 ZBTB7BO15156 539 aaPredicted RBP23.31■■□□□ 1.32
CDX1-202ENST00000616154 UQCRFS1P1P0C7P4 283 aa23.31■■□□□ 1.32
CDX1-202ENST00000616154 MCAMP43121 646 aa23.31■■□□□ 1.32
CDX1-202ENST00000616154 RAET1EQ8TD07 263 aa23.31■■□□□ 1.32
CDX1-202ENST00000616154 CEP290O15078 2479 aa23.3■■□□□ 1.32
CDX1-202ENST00000616154 FCGRTP55899 365 aa23.3■■□□□ 1.32
CDX1-202ENST00000616154 POLA2Q14181 598 aa23.3■■□□□ 1.32
CDX1-202ENST00000616154 GADL1Q6ZQY3 521 aa23.3■■□□□ 1.32
CDX1-202ENST00000616154 RAI14Q9P0K7 980 aa23.3■■□□□ 1.32
CDX1-202ENST00000616154 LOC285556D6RIA3 1793 aa23.29■■□□□ 1.32
CDX1-202ENST00000616154 CDK5RAP2Q96SN8 1893 aa23.29■■□□□ 1.32
CDX1-202ENST00000616154 GRK4P32298 578 aa23.29■■□□□ 1.32
CDX1-202ENST00000616154 OSBPL5Q9H0X9 879 aaPredicted RBP23.29■■□□□ 1.32
CDX1-202ENST00000616154 GPR108Q9NPR9 543 aa23.29■■□□□ 1.32
CDX1-202ENST00000616154 MTFR1Q15390 333 aa23.28■■□□□ 1.32
CDX1-202ENST00000616154 SSH3Q8TE77 659 aa23.28■■□□□ 1.32
CDX1-202ENST00000616154 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.28■■□□□ 1.32
CDX1-202ENST00000616154 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.28■■□□□ 1.32
CDX1-202ENST00000616154 FOCADQ5VW36 1801 aa23.27■■□□□ 1.32
CDX1-202ENST00000616154 MYO5AQ9Y4I1 1855 aaKnown RBP23.27■■□□□ 1.32
CDX1-202ENST00000616154 TRIM75PA6NK02 468 aa23.27■■□□□ 1.32
CDX1-202ENST00000616154 PRKCZQ05513 592 aa23.27■■□□□ 1.32
CDX1-202ENST00000616154 LRP2BPQ9P2M1 347 aa23.27■■□□□ 1.32
CDX1-202ENST00000616154 SIPA1L1O43166 1804 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms