RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PI16Q6UXB8 463 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 ANKRD23Q86SG2 305 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 ZSCAN29Q8IWY8 852 aaPredicted RBP9.4□□□□□ -0.9
CUX1-219ENST00000606749 ARMC5Q96C12 935 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 AK9Q5TCS8 1911 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 MYH2Q9UKX2 1941 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 ATRNL1Q5VV63 1379 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 MROH7-TTC4A0A0A0MT08 1334 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 CXCL11O14625 94 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 ZBTB7BO15156 539 aaPredicted RBP9.39□□□□□ -0.91
CUX1-219ENST00000606749 NPM3O75607 178 aaKnown RBP9.39□□□□□ -0.91
CUX1-219ENST00000606749 LDHCP07864 332 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 SLURP2P0DP57 97 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 PTPRAP18433 802 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 MCAMP43121 646 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 GSTO1P78417 241 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 LACTBP83111 547 aaPredicted RBP9.39□□□□□ -0.91
CUX1-219ENST00000606749 KIF22Q14807 665 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 C17orf99Q6UX52 265 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 SCYL3Q8IZE3 742 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 SSH3Q8TE77 659 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 NSUN4Q96CB9 384 aaKnown RBP9.39□□□□□ -0.91
CUX1-219ENST00000606749 ARHGAP39Q9C0H5 1083 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 ZHX2Q9Y6X8 837 aa9.39□□□□□ -0.91
CUX1-219ENST00000606749 RFX7Q2KHR2 1363 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 TBC1D12O60347 775 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 CTNND1O60716 968 aaKnown RBP9.38□□□□□ -0.91
CUX1-219ENST00000606749 SURF6O75683 361 aaKnown RBP9.38□□□□□ -0.91
CUX1-219ENST00000606749 MAP4K4O95819 1239 aaPredicted RBP9.38□□□□□ -0.91
CUX1-219ENST00000606749 GNRH1P01148 92 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 UQCRFS1P1P0C7P4 283 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 RLBP1P12271 317 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 PICALMQ13492 652 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 TNNI3KQ59H18 835 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 GPAT2Q6NUI2 795 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 NBPF11Q86T75 865 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 GPR108Q9NPR9 543 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 PICK1Q9NRD5 415 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 RAI14Q9P0K7 980 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 LRP2BPQ9P2M1 347 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 CPA4Q9UI42 421 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 AFG3L2Q9Y4W6 797 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 PTCH2Q9Y6C5 1203 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 FPGT-TNNI3KV9GXZ4 949 aa9.38□□□□□ -0.91
CUX1-219ENST00000606749 MKI67P46013 3256 aaKnown RBP9.38□□□□□ -0.91
CUX1-219ENST00000606749 A0A0G2JLL6 359 aaPredicted RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 SLC34A2O95436 690 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 EN2P19622 333 aaPredicted RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 CTGFP29279 349 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 OS9Q13438 667 aaPredicted RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 SLC9C1Q4G0N8 1177 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 CCDC158Q5M9N0 1113 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 PRPF38BQ5VTL8 546 aaKnown RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 FASTKD5Q7L8L6 764 aaKnown RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 PRRT2Q7Z6L0 340 aaPredicted RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 ITPRIPQ8IWB1 547 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 FTSJ3Q8IY81 847 aaKnown RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 ZNF333Q96JL9 665 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 DBNDD2Q9BQY9 259 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 C1orf115Q9H7X2 142 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 SNRKQ9NRH2 765 aa9.37□□□□□ -0.91
CUX1-219ENST00000606749 NOP58Q9Y2X3 529 aaKnown RBP9.37□□□□□ -0.91
CUX1-219ENST00000606749 ADGRA2Q96PE1 1338 aa9.36□□□□□ -0.91
CUX1-219ENST00000606749 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
CUX1-219ENST00000606749 CYP2E1P05181 493 aaPredicted RBP9.36□□□□□ -0.91
CUX1-219ENST00000606749 PSMC4P43686 418 aa9.36□□□□□ -0.91
CUX1-219ENST00000606749 PRMT2P55345 433 aa9.36□□□□□ -0.91
CUX1-219ENST00000606749 TTC39AQ5SRH9 613 aa9.36□□□□□ -0.91
CUX1-219ENST00000606749 ZNF512BQ96KM6 892 aaPredicted RBP9.36□□□□□ -0.91
CUX1-219ENST00000606749 TMEM106CQ9BVX2 250 aa9.36□□□□□ -0.91
CUX1-219ENST00000606749 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.36□□□□□ -0.91
CUX1-219ENST00000606749 FAM196BA6NMK8 535 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 FMNL1O95466 1100 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 CYP2C8P10632 490 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 BCRP11274 1271 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 HOXD10P28358 340 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 PPP4CP60510 307 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 SLC4A8Q2Y0W8 1093 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 NAA16Q6N069 864 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 SH3RF3Q8TEJ3 882 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 SH3TC2Q8TF17 1288 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 TRIM47Q96LD4 638 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 PARK7Q99497 189 aaKnown RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 CCDC8Q9H0W5 538 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 OSBPL5Q9H0X9 879 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.35□□□□□ -0.91
CUX1-219ENST00000606749 SRRDQ9UH36 339 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 SLC45A1Q9Y2W3 748 aa9.35□□□□□ -0.91
CUX1-219ENST00000606749 TRIM75PA6NK02 468 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 BAG3O95817 575 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 MYCP01106 439 aaPredicted RBP9.34□□□□□ -0.91
CUX1-219ENST00000606749 PLCG2P16885 1265 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 OSBPP22059 807 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 CAP2P40123 477 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 ZAP70P43403 619 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 RRP1BQ14684 758 aaKnown RBP9.34□□□□□ -0.91
CUX1-219ENST00000606749 CEP85Q6P2H3 762 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 GADL1Q6ZQY3 521 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 ADGRA1Q86SQ6 560 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 CCDC84Q86UT8 332 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms