RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 SLC9C1Q4G0N8 1177 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 ANKRD23Q86SG2 305 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 HMG20BQ9P0W2 317 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 PDS5AQ29RF7 1337 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 MYCP01106 439 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 PICALMQ13492 652 aa19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 SPTY2D1Q68D10 685 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 GPAT2Q6NUI2 795 aa19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 TBC1D9Q6ZT07 1266 aa19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 ZSCAN29Q8IWY8 852 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-228ENST00000602239 RFX7Q2KHR2 1363 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 RHBDL3P58872 404 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 MAP3K10Q02779 954 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 KIF22Q14807 665 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 ERICH6Q7L0X2 663 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 SH3TC2Q8TF17 1288 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 ZHX2Q9Y6X8 837 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 MROH7-TTC4A0A0A0MT08 1334 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 ADGRA2Q96PE1 1338 aa19.46■□□□□ 0.71
SHKBP1-228ENST00000602239 GPR75-ASB3A0A0A6YYF3 556 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 CXCL11O14625 94 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 PTPRAP18433 802 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 NBPF11Q86T75 865 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 SLF2Q8IX21 1173 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 SCYL3Q8IZE3 742 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 TMEM57Q8N5G2 664 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 SPATA5Q8NB90 893 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 TMEM106CQ9BVX2 250 aa19.45■□□□□ 0.7
SHKBP1-228ENST00000602239 PSMC4P43686 418 aa19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 G3BP1Q13283 466 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 GORABQ5T7V8 394 aa19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 TRIM47Q96LD4 638 aa19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 AFG3L2Q9Y4W6 797 aa19.44■□□□□ 0.7
SHKBP1-228ENST00000602239 CYP2C8P10632 490 aa19.43■□□□□ 0.7
SHKBP1-228ENST00000602239 SLC4A8Q2Y0W8 1093 aa19.43■□□□□ 0.7
SHKBP1-228ENST00000602239 NSUN4Q96CB9 384 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-228ENST00000602239 PICK1Q9NRD5 415 aa19.43■□□□□ 0.7
SHKBP1-228ENST00000602239 GNRH1P01148 92 aa19.42■□□□□ 0.7
SHKBP1-228ENST00000602239 ARID4AP29374 1257 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-228ENST00000602239 MCAMP43121 646 aa19.42■□□□□ 0.7
SHKBP1-228ENST00000602239 CCDC84Q86UT8 332 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-228ENST00000602239 RBBP6Q7Z6E9 1792 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-228ENST00000602239 A0A0G2JLL6 359 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 FAM196BA6NMK8 535 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 CTNND1O60716 968 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 OSBPP22059 807 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 ZKSCAN2Q63HK3 967 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 PRRT2Q7Z6L0 340 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 RAI14Q9P0K7 980 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 SRRDQ9UH36 339 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 DOCK2Q92608 1830 aa19.41■□□□□ 0.7
SHKBP1-228ENST00000602239 FMNL1O95466 1100 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-228ENST00000602239 BCRP11274 1271 aa19.4■□□□□ 0.7
SHKBP1-228ENST00000602239 POLA2Q14181 598 aa19.4■□□□□ 0.7
SHKBP1-228ENST00000602239 SNRKQ9NRH2 765 aa19.4■□□□□ 0.7
SHKBP1-228ENST00000602239 TRIM75PA6NK02 468 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 LDHCP07864 332 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 PRMT2P55345 433 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 GSTO1P78417 241 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 ATP8B2P98198 1209 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 MTFR1Q15390 333 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 GADL1Q6ZQY3 521 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 FASTKD5Q7L8L6 764 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 PARK7Q99497 189 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 C1orf115Q9H7X2 142 aa19.39■□□□□ 0.69
SHKBP1-228ENST00000602239 TBC1D12O60347 775 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 NPM3O75607 178 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 UQCRFS1P1P0C7P4 283 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 RLBP1P12271 317 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 RRP1BQ14684 758 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 MIER1Q8N108 512 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 SSH3Q8TE77 659 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 DBNDD2Q9BQY9 259 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 LRP2BPQ9P2M1 347 aa19.38■□□□□ 0.69
SHKBP1-228ENST00000602239 HNRNPUQ00839 825 aaKnown RBP eCLIP19.37■□□□□ 0.69
SHKBP1-228ENST00000602239 SH3RF3Q8TEJ3 882 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-228ENST00000602239 OSBPL5Q9H0X9 879 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-228ENST00000602239 GABRQQ9UN88 632 aa19.37■□□□□ 0.69
SHKBP1-228ENST00000602239 MYPNQ86TC9 1320 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 SURF6O75683 361 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 HOXD10P28358 340 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 PRKCZQ05513 592 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 TNNI3KQ59H18 835 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 RAET1EQ8TD07 263 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 GPR108Q9NPR9 543 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 FPGT-TNNI3KV9GXZ4 949 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 PHIPQ8WWQ0 1821 aa19.36■□□□□ 0.69
SHKBP1-228ENST00000602239 ZBTB7BO15156 539 aaPredicted RBP19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 MAP4K4O95819 1239 aaPredicted RBP19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 CYP2E1P05181 493 aaPredicted RBP19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 GRK4P32298 578 aa19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 TTC39AQ5SRH9 613 aa19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 TEX11Q8IYF3 940 aa19.35■□□□□ 0.69
SHKBP1-228ENST00000602239 FCGRTP55899 365 aa19.34■□□□□ 0.69
SHKBP1-228ENST00000602239 OS9Q13438 667 aaPredicted RBP19.34■□□□□ 0.69
SHKBP1-228ENST00000602239 TREML2Q5T2D2 321 aa19.34■□□□□ 0.69
SHKBP1-228ENST00000602239 ADGRA1Q86SQ6 560 aa19.34■□□□□ 0.69
SHKBP1-228ENST00000602239 AATFQ9NY61 560 aaKnown RBP eCLIP19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms