RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TMEM106CQ9BVX2 250 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 IL1RAPL2Q9NP60 686 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 FBXO3Q9UK99 471 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 BTBD19C9JJ37 291 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 KIF22Q14807 665 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 ATG9AQ7Z3C6 839 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 OTUD7AQ8TE49 926 aaPredicted RBP15.47■□□□□ 0.07
UPF1-208ENST00000600012 FAM151AQ8WW52 585 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 KIF1BPQ96EK5 621 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 PTCH2Q9Y6C5 1203 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 ZSWIM8A7E2V4 1837 aa15.47■□□□□ 0.07
UPF1-208ENST00000600012 CENPFP49454 3210 aa15.46■□□□□ 0.07
UPF1-208ENST00000600012 CIAO1O76071 339 aa15.46■□□□□ 0.07
UPF1-208ENST00000600012 EN2P19622 333 aaPredicted RBP15.46■□□□□ 0.07
UPF1-208ENST00000600012 PPATQ06203 517 aa15.46■□□□□ 0.07
UPF1-208ENST00000600012 ERC1Q8IUD2 1116 aa15.46■□□□□ 0.07
UPF1-208ENST00000600012 GNL3LQ9NVN8 582 aaKnown RBP15.46■□□□□ 0.07
UPF1-208ENST00000600012 DAGLAQ9Y4D2 1042 aa15.46■□□□□ 0.07
UPF1-208ENST00000600012 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.46■□□□□ 0.07
UPF1-208ENST00000600012 MYH2Q9UKX2 1941 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 GNRH1P01148 92 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 PRDX5P30044 214 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 LACTBP83111 547 aaPredicted RBP15.45■□□□□ 0.06
UPF1-208ENST00000600012 ATP2B3Q16720 1220 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 CDC42EP5Q6NZY7 148 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 MIGA2Q7L4E1 593 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 CEP126Q9P2H0 1117 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 DOCK2Q92608 1830 aa15.45■□□□□ 0.06
UPF1-208ENST00000600012 SALL1Q9NSC2 1324 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 SEMA3EO15041 775 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 LDHBP07195 334 aaKnown RBP15.44■□□□□ 0.06
UPF1-208ENST00000600012 INPP5BP32019 993 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 PRMT2P55345 433 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 TCP10Q12799 353 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 DIXDC1Q155Q3 683 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 ZNF112Q9UJU3 913 aa15.44■□□□□ 0.06
UPF1-208ENST00000600012 MKI67P46013 3256 aaKnown RBP15.44■□□□□ 0.06
UPF1-208ENST00000600012 TFCP2Q12800 502 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 SLC4A8Q2Y0W8 1093 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 NOL9Q5SY16 702 aaKnown RBP15.43■□□□□ 0.06
UPF1-208ENST00000600012 ANKRD23Q86SG2 305 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 PLEKHM2Q8IWE5 1019 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 ARHGAP39Q9C0H5 1083 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 DENND2AQ9ULE3 1009 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 KCNH4Q9UQ05 1017 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 SALL3Q9BXA9 1300 aa15.43■□□□□ 0.06
UPF1-208ENST00000600012 ZBTB22O15209 634 aa15.42■□□□□ 0.06
UPF1-208ENST00000600012 IL15P40933 162 aaPredicted RBP15.42■□□□□ 0.06
UPF1-208ENST00000600012 NFIAQ12857 509 aa15.42■□□□□ 0.06
UPF1-208ENST00000600012 PDHXO00330 501 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 PHKA1P46020 1223 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 HABP4Q5JVS0 413 aaKnown RBP15.41■□□□□ 0.06
UPF1-208ENST00000600012 TSHZ3Q63HK5 1081 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 C17orf99Q6UX52 265 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 CLASRPQ8N2M8 674 aaKnown RBP15.41■□□□□ 0.06
UPF1-208ENST00000600012 ZGPATQ8N5A5 531 aaKnown RBP15.41■□□□□ 0.06
UPF1-208ENST00000600012 SH3TC2Q8TF17 1288 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 USP40Q9NVE5 1235 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 FAM198AQ9UFP1 575 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 BRCA2P51587 3418 aa15.41■□□□□ 0.06
UPF1-208ENST00000600012 AACSQ86V21 672 aa15.4■□□□□ 0.06
UPF1-208ENST00000600012 EAF2Q96CJ1 260 aaPredicted RBP15.4■□□□□ 0.06
UPF1-208ENST00000600012 CPA4Q9UI42 421 aa15.4■□□□□ 0.06
UPF1-208ENST00000600012 ADGRA2Q96PE1 1338 aa15.4■□□□□ 0.06
UPF1-208ENST00000600012 MGAMO43451 1857 aa15.4■□□□□ 0.06
UPF1-208ENST00000600012 PTPRFP10586 1907 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 ENTPD3O75355 529 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 MX1P20591 662 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 HOXD10P28358 340 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 PSMC4P43686 418 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 PDE1AP54750 535 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 TNNI3KQ59H18 835 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 CCDC102BQ68D86 513 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 PARK7Q99497 189 aaKnown RBP15.39■□□□□ 0.05
UPF1-208ENST00000600012 IDI2Q9BXS1 227 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 CCDC8Q9H0W5 538 aaPredicted RBP15.39■□□□□ 0.05
UPF1-208ENST00000600012 TLR7Q9NYK1 1049 aaKnown RBP15.39■□□□□ 0.05
UPF1-208ENST00000600012 FPGT-TNNI3KV9GXZ4 949 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 DOCK1Q14185 1865 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 CEP290O15078 2479 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 GAKO14976 1311 aa15.39■□□□□ 0.05
UPF1-208ENST00000600012 PDS5AQ29RF7 1337 aaKnown RBP15.39■□□□□ 0.05
UPF1-208ENST00000600012 RFX7Q2KHR2 1363 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 ATRNL1Q5VV63 1379 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 CXCL11O14625 94 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 MYCP01106 439 aaPredicted RBP15.38■□□□□ 0.05
UPF1-208ENST00000600012 IFIT2P09913 472 aaKnown RBP15.38■□□□□ 0.05
UPF1-208ENST00000600012 MOGSQ13724 837 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 DZIP1Q86YF9 867 aaKnown RBP15.38■□□□□ 0.05
UPF1-208ENST00000600012 SLF2Q8IX21 1173 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 TRIM47Q96LD4 638 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 SRRDQ9UH36 339 aa15.38■□□□□ 0.05
UPF1-208ENST00000600012 GSPT1P15170 499 aaKnown RBP15.37■□□□□ 0.05
UPF1-208ENST00000600012 OSBPP22059 807 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 CTGFP29279 349 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 ADORA1P30542 326 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 RASGRF1Q13972 1273 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 TTC22Q5TAA0 569 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 ZSCAN29Q8IWY8 852 aaPredicted RBP15.37■□□□□ 0.05
UPF1-208ENST00000600012 ZFPM1Q8IX07 1006 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms