RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PI16Q6UXB8 463 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 ANKRD23Q86SG2 305 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 SCYL3Q8IZE3 742 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 NOL10Q9BSC4 688 aaKnown RBP12.05□□□□□ -0.48
VRK3-216ENST00000599342 C1orf115Q9H7X2 142 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 LRP2BPQ9P2M1 347 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 KCNH4Q9UQ05 1017 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 DDTLA6NHG4 134 aaPredicted RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 SURF6O75683 361 aaKnown RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 MAP4K4O95819 1239 aaPredicted RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 MCAMP43121 646 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 LACTBP83111 547 aaPredicted RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 ATP8B2P98198 1209 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 SLC9C1Q4G0N8 1177 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 TNNI3KQ59H18 835 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 TBC1D9Q6ZT07 1266 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 NBPF11Q86T75 865 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 SSH3Q8TE77 659 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 ARMC5Q96C12 935 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 NSUN4Q96CB9 384 aaKnown RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 GPR108Q9NPR9 543 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 DDX4Q9NQI0 724 aaKnown RBP12.04□□□□□ -0.48
VRK3-216ENST00000599342 FPGT-TNNI3KV9GXZ4 949 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 ZBED9Q6R2W3 1325 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 ATRNL1Q5VV63 1379 aa12.04□□□□□ -0.48
VRK3-216ENST00000599342 PHF20L1A8MW92 1017 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 CXCL11O14625 94 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 GNRH1P01148 92 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 RHBDL3P58872 404 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 CAP1Q01518 475 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 SH3BP5LQ7L8J4 393 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 PARK7Q99497 189 aaKnown RBP12.03□□□□□ -0.48
VRK3-216ENST00000599342 PTCH2Q9Y6C5 1203 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 ZHX2Q9Y6X8 837 aa12.03□□□□□ -0.48
VRK3-216ENST00000599342 POTEFA5A3E0 1075 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 CTNND1O60716 968 aaKnown RBP12.02□□□□□ -0.49
VRK3-216ENST00000599342 NPM3O75607 178 aaKnown RBP12.02□□□□□ -0.49
VRK3-216ENST00000599342 RLBP1P12271 317 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 PTPRAP18433 802 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 PRPF38BQ5VTL8 546 aaKnown RBP12.02□□□□□ -0.49
VRK3-216ENST00000599342 NAA16Q6N069 864 aaPredicted RBP12.02□□□□□ -0.49
VRK3-216ENST00000599342 FASTKD5Q7L8L6 764 aaKnown RBP12.02□□□□□ -0.49
VRK3-216ENST00000599342 ZNF384Q8TF68 577 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 DBNDD2Q9BQY9 259 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 TMEM106CQ9BVX2 250 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 ARHGAP39Q9C0H5 1083 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.02□□□□□ -0.49
VRK3-216ENST00000599342 CPA4Q9UI42 421 aa12.02□□□□□ -0.49
VRK3-216ENST00000599342 A0A0G2JLL6 359 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 ZBTB7BO15156 539 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 ECM2O94769 699 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 BAG3O95817 575 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 PLCG2P16885 1265 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 HOXD10P28358 340 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 PRMT2P55345 433 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 MAP3K10Q02779 954 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 C17orf99Q6UX52 265 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 GADL1Q6ZQY3 521 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 PRRT2Q7Z6L0 340 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 TEX11Q8IYF3 940 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 ZNF333Q96JL9 665 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 OSBPL5Q9H0X9 879 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 SNRKQ9NRH2 765 aa12.01□□□□□ -0.49
VRK3-216ENST00000599342 COL2A1P02458 1487 aaPredicted RBP12.01□□□□□ -0.49
VRK3-216ENST00000599342 MAST2Q6P0Q8 1798 aa12□□□□□ -0.49
VRK3-216ENST00000599342 TRIM75PA6NK02 468 aa12□□□□□ -0.49
VRK3-216ENST00000599342 TBC1D12O60347 775 aa12□□□□□ -0.49
VRK3-216ENST00000599342 FMNL1O95466 1100 aaPredicted RBP12□□□□□ -0.49
VRK3-216ENST00000599342 PSMC4P43686 418 aa12□□□□□ -0.49
VRK3-216ENST00000599342 MOGSQ13724 837 aa12□□□□□ -0.49
VRK3-216ENST00000599342 SLC4A8Q2Y0W8 1093 aa12□□□□□ -0.49
VRK3-216ENST00000599342 AATFQ9NY61 560 aaKnown RBP eCLIP12□□□□□ -0.49
VRK3-216ENST00000599342 NOP58Q9Y2X3 529 aaKnown RBP12□□□□□ -0.49
VRK3-216ENST00000599342 AFG3L2Q9Y4W6 797 aa12□□□□□ -0.49
VRK3-216ENST00000599342 HTTP42858 3142 aa12□□□□□ -0.49
VRK3-216ENST00000599342 DOCK1Q14185 1865 aa12□□□□□ -0.49
VRK3-216ENST00000599342 FAM196BA6NMK8 535 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 SLURP2P0DP57 97 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 CYP2C8P10632 490 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 MS4A1P11836 297 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 GPAT2Q6NUI2 795 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 CEP85Q6P2H3 762 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 ERC1Q8IUD2 1116 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 SH3RF3Q8TEJ3 882 aaPredicted RBP11.99□□□□□ -0.49
VRK3-216ENST00000599342 SMCR8Q8TEV9 937 aaPredicted RBP11.99□□□□□ -0.49
VRK3-216ENST00000599342 ZNF512BQ96KM6 892 aaPredicted RBP11.99□□□□□ -0.49
VRK3-216ENST00000599342 DBNLQ9UJU6 430 aaKnown RBP11.99□□□□□ -0.49
VRK3-216ENST00000599342 ADGRA2Q96PE1 1338 aa11.99□□□□□ -0.49
VRK3-216ENST00000599342 ZSWIM8A7E2V4 1837 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 RBBP6Q7Z6E9 1792 aaKnown RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 MYPNQ86TC9 1320 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 IGSF3O75054 1194 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 MYCP01106 439 aaPredicted RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 CYP2E1P05181 493 aaPredicted RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 ZAP70P43403 619 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 FCGRTP55899 365 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 RAET1EQ8TD07 263 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 PANK1Q8TE04 598 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 SH3TC2Q8TF17 1288 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 TRIM47Q96LD4 638 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms