RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 DDX4Q9NQI0 724 aaKnown RBP12.93□□□□□ -0.34
RETREG3-209ENST00000590035 USP40Q9NVE5 1235 aa12.93□□□□□ -0.34
RETREG3-209ENST00000590035 COL2A1P02458 1487 aaPredicted RBP12.92□□□□□ -0.34
RETREG3-209ENST00000590035 A0A1B0GUL7 405 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 SRGAP3O43295 1099 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 GNRH1P01148 92 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 RGS3P49796 1198 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 TFCP2Q12800 502 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 DOCK1Q14185 1865 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 ZGPATQ8N5A5 531 aaKnown RBP12.92□□□□□ -0.34
RETREG3-209ENST00000590035 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.92□□□□□ -0.34
RETREG3-209ENST00000590035 XAGE2Q96GT9 111 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 TNNQ9UQP3 1299 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 AK9Q5TCS8 1911 aa12.92□□□□□ -0.34
RETREG3-209ENST00000590035 MROH7-TTC4A0A0A0MT08 1334 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 GPR75-ASB3A0A0A6YYF3 556 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 DDTLA6NHG4 134 aaPredicted RBP12.91□□□□□ -0.34
RETREG3-209ENST00000590035 CXCL11O14625 94 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 BCRP11274 1271 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 EN2P19622 333 aaPredicted RBP12.91□□□□□ -0.34
RETREG3-209ENST00000590035 PRMT2P55345 433 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 ARHGEF6Q15052 776 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 ATF7IPQ6VMQ6 1270 aa12.91□□□□□ -0.34
RETREG3-209ENST00000590035 A0A0G2JLL6 359 aaPredicted RBP12.9□□□□□ -0.34
RETREG3-209ENST00000590035 PNMA6EA0A0J9YXQ4 647 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 PDHXO00330 501 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 SLURP2P0DP57 97 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 PTPRAP18433 802 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 ARID4AP29374 1257 aaPredicted RBP12.9□□□□□ -0.34
RETREG3-209ENST00000590035 PRRT2Q7Z6L0 340 aaPredicted RBP12.9□□□□□ -0.34
RETREG3-209ENST00000590035 SCYL3Q8IZE3 742 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 TRIM47Q96LD4 638 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 HMG20BQ9P0W2 317 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 PCDH10Q9P2E7 1040 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 AKAP2Q9Y2D5 859 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 AFG3L2Q9Y4W6 797 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 SIPA1L1O43166 1804 aa12.9□□□□□ -0.34
RETREG3-209ENST00000590035 MGAMO43451 1857 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 TBC1D12O60347 775 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 BCAR3O75815 825 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 MAP4K4O95819 1239 aaPredicted RBP12.89□□□□□ -0.35
RETREG3-209ENST00000590035 MECOMQ03112 1051 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 MVPQ14764 893 aaKnown RBP12.89□□□□□ -0.35
RETREG3-209ENST00000590035 SLC9C1Q4G0N8 1177 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 NSUN4Q96CB9 384 aaKnown RBP12.89□□□□□ -0.35
RETREG3-209ENST00000590035 SRRDQ9UH36 339 aa12.89□□□□□ -0.35
RETREG3-209ENST00000590035 GNAI2P04899 355 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 BTDP43251 543 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 SPTY2D1Q68D10 685 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-209ENST00000590035 PI16Q6UXB8 463 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 DZIP1Q86YF9 867 aaKnown RBP12.88□□□□□ -0.35
RETREG3-209ENST00000590035 SHISA4Q96DD7 197 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 CPA4Q9UI42 421 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 SLC45A1Q9Y2W3 748 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 LOC285556D6RIA3 1793 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 MAST2Q6P0Q8 1798 aa12.88□□□□□ -0.35
RETREG3-209ENST00000590035 TRIOBPQ9H2D6 2365 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 IPO8O15397 1037 aaKnown RBP12.87□□□□□ -0.35
RETREG3-209ENST00000590035 CTNND1O60716 968 aaKnown RBP12.87□□□□□ -0.35
RETREG3-209ENST00000590035 OSBPP22059 807 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 MCAMP43121 646 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 PSMC4P43686 418 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 UBE2Q1Q7Z7E8 422 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 NBPF11Q86T75 865 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 SLF2Q8IX21 1173 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 SPATA5Q8NB90 893 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 SSH3Q8TE77 659 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 SH3TC2Q8TF17 1288 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 GPR108Q9NPR9 543 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 ABCF2Q9UG63 623 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 CDK5RAP2Q96SN8 1893 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 SZT2Q5T011 3432 aa12.87□□□□□ -0.35
RETREG3-209ENST00000590035 FOCADQ5VW36 1801 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 CYP2C8P10632 490 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 KIF22Q14807 665 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 ERICH6Q7L0X2 663 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 PARK7Q99497 189 aaKnown RBP12.86□□□□□ -0.35
RETREG3-209ENST00000590035 TMEM106CQ9BVX2 250 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 ZHX2Q9Y6X8 837 aa12.86□□□□□ -0.35
RETREG3-209ENST00000590035 DOCK3Q8IZD9 2030 aa12.85□□□□□ -0.35
RETREG3-209ENST00000590035 RRP1BQ14684 758 aaKnown RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 TBC1D9Q6ZT07 1266 aa12.85□□□□□ -0.35
RETREG3-209ENST00000590035 FASTKD5Q7L8L6 764 aaKnown RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 METTL16Q86W50 562 aaKnown RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 TMEM57Q8N5G2 664 aa12.85□□□□□ -0.35
RETREG3-209ENST00000590035 GCC1Q96CN9 775 aa12.85□□□□□ -0.35
RETREG3-209ENST00000590035 ZNF512BQ96KM6 892 aaPredicted RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 ATAD5Q96QE3 1844 aa12.85□□□□□ -0.35
RETREG3-209ENST00000590035 MYO5AQ9Y4I1 1855 aaKnown RBP12.85□□□□□ -0.35
RETREG3-209ENST00000590035 IGSF3O75054 1194 aa12.84□□□□□ -0.35
RETREG3-209ENST00000590035 MTFR1Q15390 333 aa12.84□□□□□ -0.35
RETREG3-209ENST00000590035 HABP4Q5JVS0 413 aaKnown RBP12.84□□□□□ -0.35
RETREG3-209ENST00000590035 NEUROD6Q96NK8 337 aa12.84□□□□□ -0.35
RETREG3-209ENST00000590035 OSBPL5Q9H0X9 879 aaPredicted RBP12.84□□□□□ -0.35
RETREG3-209ENST00000590035 PICK1Q9NRD5 415 aa12.84□□□□□ -0.35
RETREG3-209ENST00000590035 NOP58Q9Y2X3 529 aaKnown RBP12.84□□□□□ -0.35
RETREG3-209ENST00000590035 MYPNQ86TC9 1320 aa12.84□□□□□ -0.35
RETREG3-209ENST00000590035 LDHCP07864 332 aa12.83□□□□□ -0.36
RETREG3-209ENST00000590035 UQCRFS1P1P0C7P4 283 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms