RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 SSH3Q8TE77 659 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 NSUN4Q96CB9 384 aaKnown RBP17.67■□□□□ 0.42
VMP1-206ENST00000587945 ARHGAP39Q9C0H5 1083 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 RAI14Q9P0K7 980 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 KCNH4Q9UQ05 1017 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 HTTP42858 3142 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 POTEFA5A3E0 1075 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 ZBTB7BO15156 539 aaPredicted RBP17.66■□□□□ 0.42
VMP1-206ENST00000587945 SURF6O75683 361 aaKnown RBP17.66■□□□□ 0.42
VMP1-206ENST00000587945 MOGSQ13724 837 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 TNNI3KQ59H18 835 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 DBNDD2Q9BQY9 259 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 ZCCHC17Q9NP64 241 aaKnown RBP17.66■□□□□ 0.42
VMP1-206ENST00000587945 SNRKQ9NRH2 765 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 FPGT-TNNI3KV9GXZ4 949 aa17.66■□□□□ 0.42
VMP1-206ENST00000587945 PDHXO00330 501 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 UQCRFS1P1P0C7P4 283 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 TTC39AQ5SRH9 613 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 ANKRD23Q86SG2 305 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 CPA4Q9UI42 421 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 PTCH2Q9Y6C5 1203 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 ZHX2Q9Y6X8 837 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 LAMB1P07942 1786 aa17.65■□□□□ 0.42
VMP1-206ENST00000587945 GSTO1P78417 241 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 LACTBP83111 547 aaPredicted RBP17.64■□□□□ 0.41
VMP1-206ENST00000587945 MAP3K10Q02779 954 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 SCYL3Q8IZE3 742 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 ARMC5Q96C12 935 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 GPR108Q9NPR9 543 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 PICK1Q9NRD5 415 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 LRP2BPQ9P2M1 347 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.64■□□□□ 0.41
VMP1-206ENST00000587945 MYH13Q9UKX3 1938 aa17.64■□□□□ 0.41
VMP1-206ENST00000587945 FAM196BA6NMK8 535 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 CXCL11O14625 94 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 LDHCP07864 332 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 PTPRAP18433 802 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 ARHGEF6Q15052 776 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 GPAT2Q6NUI2 795 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 C17orf99Q6UX52 265 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 CCDC84Q86UT8 332 aaPredicted RBP17.63■□□□□ 0.41
VMP1-206ENST00000587945 PANK1Q8TE04 598 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 ZBED9Q6R2W3 1325 aa17.63■□□□□ 0.41
VMP1-206ENST00000587945 KIF22Q14807 665 aa17.62■□□□□ 0.41
VMP1-206ENST00000587945 CCDC158Q5M9N0 1113 aa17.62■□□□□ 0.41
VMP1-206ENST00000587945 TLR7Q9NYK1 1049 aaKnown RBP17.62■□□□□ 0.41
VMP1-206ENST00000587945 NOP58Q9Y2X3 529 aaKnown RBP17.62■□□□□ 0.41
VMP1-206ENST00000587945 TNRC18O15417 2968 aaPredicted RBP17.62■□□□□ 0.41
VMP1-206ENST00000587945 CYP2C8P10632 490 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 CTGFP29279 349 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 SLC9C1Q4G0N8 1177 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 TEX11Q8IYF3 940 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 SH3RF3Q8TEJ3 882 aaPredicted RBP17.61■□□□□ 0.41
VMP1-206ENST00000587945 CCDC8Q9H0W5 538 aaPredicted RBP17.61■□□□□ 0.41
VMP1-206ENST00000587945 AFG3L2Q9Y4W6 797 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 ADGRA2Q96PE1 1338 aa17.61■□□□□ 0.41
VMP1-206ENST00000587945 A0A0G2JLL6 359 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 CTNND1O60716 968 aaKnown RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 NPM3O75607 178 aaKnown RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 MYCP01106 439 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 CYP2E1P05181 493 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 EN2P19622 333 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 ZAP70P43403 619 aa17.6■□□□□ 0.41
VMP1-206ENST00000587945 NAA16Q6N069 864 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 CEP85Q6P2H3 762 aa17.6■□□□□ 0.41
VMP1-206ENST00000587945 GADL1Q6ZQY3 521 aa17.6■□□□□ 0.41
VMP1-206ENST00000587945 PRRT2Q7Z6L0 340 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 ZNF333Q96JL9 665 aa17.6■□□□□ 0.41
VMP1-206ENST00000587945 OSBPL5Q9H0X9 879 aaPredicted RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.6■□□□□ 0.41
VMP1-206ENST00000587945 AATFQ9NY61 560 aaKnown RBP eCLIP17.6■□□□□ 0.41
VMP1-206ENST00000587945 DBNLQ9UJU6 430 aaKnown RBP17.6■□□□□ 0.41
VMP1-206ENST00000587945 TRIM75PA6NK02 468 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 TBC1D12O60347 775 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 PSMC4P43686 418 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 ADGRA1Q86SQ6 560 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 SH3TC2Q8TF17 1288 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 EAF2Q96CJ1 260 aaPredicted RBP17.59■□□□□ 0.41
VMP1-206ENST00000587945 TRIM47Q96LD4 638 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 PARK7Q99497 189 aaKnown RBP17.59■□□□□ 0.41
VMP1-206ENST00000587945 PIH1D3Q9NQM4 214 aaKnown RBP17.59■□□□□ 0.41
VMP1-206ENST00000587945 MYH2Q9UKX2 1941 aa17.59■□□□□ 0.41
VMP1-206ENST00000587945 CENPFP49454 3210 aa17.58■□□□□ 0.41
VMP1-206ENST00000587945 MAP4K4O95819 1239 aaPredicted RBP17.58■□□□□ 0.4
VMP1-206ENST00000587945 RRP1BQ14684 758 aaKnown RBP17.58■□□□□ 0.4
VMP1-206ENST00000587945 FASTKD5Q7L8L6 764 aaKnown RBP17.58■□□□□ 0.4
VMP1-206ENST00000587945 NOL10Q9BSC4 688 aaKnown RBP17.58■□□□□ 0.4
VMP1-206ENST00000587945 FMNL1O95466 1100 aaPredicted RBP17.57■□□□□ 0.4
VMP1-206ENST00000587945 PRPF38BQ5VTL8 546 aaKnown RBP17.57■□□□□ 0.4
VMP1-206ENST00000587945 NBPF11Q86T75 865 aa17.57■□□□□ 0.4
VMP1-206ENST00000587945 ZNF512BQ96KM6 892 aaPredicted RBP17.57■□□□□ 0.4
VMP1-206ENST00000587945 TMEM106CQ9BVX2 250 aa17.57■□□□□ 0.4
VMP1-206ENST00000587945 EXOC6BQ9Y2D4 811 aa17.57■□□□□ 0.4
VMP1-206ENST00000587945 BAG3O95817 575 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 BCRP11274 1271 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 OSBPP22059 807 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 MAPKAPK5Q8IW41 473 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 TGFBRAP1Q8WUH2 860 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 SRRDQ9UH36 339 aa17.56■□□□□ 0.4
VMP1-206ENST00000587945 NDUFB9Q9Y6M9 179 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms