RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF384Q8TF68 577 aa25.21■■□□□ 1.63
SHMT1-209ENST00000582653 MYH2Q9UKX2 1941 aa25.21■■□□□ 1.63
SHMT1-209ENST00000582653 CXCL11O14625 94 aa25.2■■□□□ 1.62
SHMT1-209ENST00000582653 ARID4AP29374 1257 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-209ENST00000582653 BTDP43251 543 aa25.2■■□□□ 1.62
SHMT1-209ENST00000582653 C17orf99Q6UX52 265 aa25.2■■□□□ 1.62
SHMT1-209ENST00000582653 PANK1Q8TE04 598 aa25.2■■□□□ 1.62
SHMT1-209ENST00000582653 AK9Q5TCS8 1911 aa25.2■■□□□ 1.62
SHMT1-209ENST00000582653 ATRNL1Q5VV63 1379 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 MROH7-TTC4A0A0A0MT08 1334 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 POTEFA5A3E0 1075 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 LDHCP07864 332 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 MCAMP43121 646 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 LACTBP83111 547 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-209ENST00000582653 MOGSQ13724 837 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 KIF22Q14807 665 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 TNNI3KQ59H18 835 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 NBPF11Q86T75 865 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 ZSCAN29Q8IWY8 852 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-209ENST00000582653 FPGT-TNNI3KV9GXZ4 949 aa25.19■■□□□ 1.62
SHMT1-209ENST00000582653 CENPFP49454 3210 aa25.18■■□□□ 1.62
SHMT1-209ENST00000582653 DDTLA6NHG4 134 aaPredicted RBP25.18■■□□□ 1.62
SHMT1-209ENST00000582653 PDHXO00330 501 aa25.18■■□□□ 1.62
SHMT1-209ENST00000582653 NPM3O75607 178 aaKnown RBP25.18■■□□□ 1.62
SHMT1-209ENST00000582653 MAP4K4O95819 1239 aaPredicted RBP25.18■■□□□ 1.62
SHMT1-209ENST00000582653 GNRH1P01148 92 aa25.18■■□□□ 1.62
SHMT1-209ENST00000582653 NSUN4Q96CB9 384 aaKnown RBP25.18■■□□□ 1.62
SHMT1-209ENST00000582653 DBNDD2Q9BQY9 259 aa25.18■■□□□ 1.62
SHMT1-209ENST00000582653 DDX4Q9NQI0 724 aaKnown RBP25.18■■□□□ 1.62
SHMT1-209ENST00000582653 UQCRFS1P1P0C7P4 283 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 SLURP2P0DP57 97 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 RHBDL3P58872 404 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 GSTO1P78417 241 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 PRPF38BQ5VTL8 546 aaKnown RBP25.17■■□□□ 1.62
SHMT1-209ENST00000582653 SCYL3Q8IZE3 742 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 GPR108Q9NPR9 543 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 SNRKQ9NRH2 765 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 RAI14Q9P0K7 980 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 RFX7Q2KHR2 1363 aa25.17■■□□□ 1.62
SHMT1-209ENST00000582653 SLC34A2O95436 690 aa25.16■■□□□ 1.62
SHMT1-209ENST00000582653 PICALMQ13492 652 aa25.16■■□□□ 1.62
SHMT1-209ENST00000582653 PICK1Q9NRD5 415 aa25.16■■□□□ 1.62
SHMT1-209ENST00000582653 NOP58Q9Y2X3 529 aaKnown RBP25.16■■□□□ 1.62
SHMT1-209ENST00000582653 PTCH2Q9Y6C5 1203 aa25.16■■□□□ 1.62
SHMT1-209ENST00000582653 ZHX2Q9Y6X8 837 aa25.16■■□□□ 1.62
SHMT1-209ENST00000582653 CTNND1O60716 968 aaKnown RBP25.15■■□□□ 1.62
SHMT1-209ENST00000582653 PTPRAP18433 802 aa25.15■■□□□ 1.62
SHMT1-209ENST00000582653 PRMT2P55345 433 aa25.15■■□□□ 1.62
SHMT1-209ENST00000582653 TTC39AQ5SRH9 613 aa25.15■■□□□ 1.62
SHMT1-209ENST00000582653 ZNF333Q96JL9 665 aa25.15■■□□□ 1.62
SHMT1-209ENST00000582653 ARHGAP39Q9C0H5 1083 aa25.15■■□□□ 1.62
SHMT1-209ENST00000582653 PDE4DIPQ5VU43 2346 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 TBC1D12O60347 775 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 SLC9C1Q4G0N8 1177 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 GPAT2Q6NUI2 795 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 CEP85Q6P2H3 762 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 LRP2BPQ9P2M1 347 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 CPA4Q9UI42 421 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 AFG3L2Q9Y4W6 797 aa25.14■■□□□ 1.62
SHMT1-209ENST00000582653 CCDC158Q5M9N0 1113 aa25.13■■□□□ 1.61
SHMT1-209ENST00000582653 FASTKD5Q7L8L6 764 aaKnown RBP25.13■■□□□ 1.61
SHMT1-209ENST00000582653 TMEM106CQ9BVX2 250 aa25.13■■□□□ 1.61
SHMT1-209ENST00000582653 EN2P19622 333 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-209ENST00000582653 CCDC8Q9H0W5 538 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-209ENST00000582653 TLR7Q9NYK1 1049 aaKnown RBP25.12■■□□□ 1.61
SHMT1-209ENST00000582653 ADGRA2Q96PE1 1338 aa25.12■■□□□ 1.61
SHMT1-209ENST00000582653 A0A0G2JLL6 359 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-209ENST00000582653 PRRT2Q7Z6L0 340 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-209ENST00000582653 EAF2Q96CJ1 260 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-209ENST00000582653 DBNLQ9UJU6 430 aaKnown RBP25.11■■□□□ 1.61
SHMT1-209ENST00000582653 HOXD10P28358 340 aa25.1■■□□□ 1.61
SHMT1-209ENST00000582653 CTGFP29279 349 aa25.1■■□□□ 1.61
SHMT1-209ENST00000582653 PSMC4P43686 418 aa25.1■■□□□ 1.61
SHMT1-209ENST00000582653 ZNF512BQ96KM6 892 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-209ENST00000582653 PARK7Q99497 189 aaKnown RBP25.1■■□□□ 1.61
SHMT1-209ENST00000582653 CYP2E1P05181 493 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-209ENST00000582653 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.09■■□□□ 1.61
SHMT1-209ENST00000582653 EXOC6BQ9Y2D4 811 aa25.09■■□□□ 1.61
SHMT1-209ENST00000582653 BRCA2P51587 3418 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 DOCK2Q92608 1830 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 IGSF3O75054 1194 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 CYP2C8P10632 490 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 BCRP11274 1271 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 ZAP70P43403 619 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 TRIM47Q96LD4 638 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 OSBPL5Q9H0X9 879 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-209ENST00000582653 SRRDQ9UH36 339 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 SLC45A1Q9Y2W3 748 aa25.08■■□□□ 1.61
SHMT1-209ENST00000582653 FAM196BA6NMK8 535 aa25.07■■□□□ 1.6
SHMT1-209ENST00000582653 FMNL1O95466 1100 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-209ENST00000582653 NAA16Q6N069 864 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-209ENST00000582653 SH3RF3Q8TEJ3 882 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-209ENST00000582653 SH3TC2Q8TF17 1288 aa25.07■■□□□ 1.6
SHMT1-209ENST00000582653 COG6Q9Y2V7 657 aa25.07■■□□□ 1.6
SHMT1-209ENST00000582653 MKI67P46013 3256 aaKnown RBP25.06■■□□□ 1.6
SHMT1-209ENST00000582653 BAG3O95817 575 aa25.06■■□□□ 1.6
SHMT1-209ENST00000582653 MS4A1P11836 297 aa25.06■■□□□ 1.6
SHMT1-209ENST00000582653 PPP4CP60510 307 aa25.06■■□□□ 1.6
SHMT1-209ENST00000582653 SLC4A8Q2Y0W8 1093 aa25.06■■□□□ 1.6
SHMT1-209ENST00000582653 TEX11Q8IYF3 940 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms