RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 HSPA1AP0DMV8 641 aaKnown RBP9.31□□□□□ -0.92
NUP88-205ENST00000572809 HSPA1BP0DMV9 641 aaKnown RBP9.31□□□□□ -0.92
NUP88-205ENST00000572809 MMP14P50281 582 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 UBE4AQ14139 1066 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 DLK2Q6UY11 383 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 ZNF804AQ7Z570 1209 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 SAPCD2Q86UD0 394 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 SULF1Q8IWU6 871 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 ZNF609O15014 1411 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 MROH5Q6ZUA9 1318 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 IRS2Q9Y4H2 1338 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 IPO8O15397 1037 aaKnown RBP9.3□□□□□ -0.92
NUP88-205ENST00000572809 SASH1O94885 1247 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 UBTFL1P0CB47 393 aaPredicted RBP9.3□□□□□ -0.92
NUP88-205ENST00000572809 IL1R1P14778 569 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 ECE1P42892 770 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 LRRC24Q50LG9 513 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 ANGEL2Q5VTE6 544 aaKnown RBP9.3□□□□□ -0.92
NUP88-205ENST00000572809 CYP4F22Q6NT55 531 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 KIAA0825Q8IV33 1275 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 BEGAINQ9BUH8 593 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 HDAC9Q9UKV0 1011 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 HDAC5Q9UQL6 1122 aa9.3□□□□□ -0.92
NUP88-205ENST00000572809 ASTN2O75129 1339 aaPredicted RBP9.3□□□□□ -0.92
NUP88-205ENST00000572809 ADM5C9JUS6 153 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 BCAR3O75815 825 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 HIBADHP31937 336 aaKnown RBP9.29□□□□□ -0.92
NUP88-205ENST00000572809 GRM1Q13255 1194 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 SKIV2LQ15477 1246 aaKnown RBP9.29□□□□□ -0.92
NUP88-205ENST00000572809 NBPF9Q3BBW0 867 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 SH3D19Q5HYK7 790 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 METTL24Q5JXM2 366 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 C2orf69Q8N8R5 385 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 KLHDC4Q8TBB5 520 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 HHIPL1Q96JK4 782 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 FAM84BQ96KN1 310 aaPredicted RBP9.29□□□□□ -0.92
NUP88-205ENST00000572809 CAPNS2Q96L46 248 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 FAM217BQ9NTX9 383 aaPredicted RBP9.29□□□□□ -0.92
NUP88-205ENST00000572809 GGA3Q9NZ52 723 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 TRPM7Q96QT4 1865 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 KIF16BQ96L93 1317 aa9.29□□□□□ -0.92
NUP88-205ENST00000572809 POLR2AP24928 1970 aaKnown RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 WNT10BO00744 389 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 PDE8BO95263 885 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 GYG1P46976 350 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 RFX5P48382 616 aaPredicted RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 FKBP1AP62942 108 aaKnown RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 MAP2K1Q02750 393 aaPredicted RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 PTPN12Q05209 780 aaKnown RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 DIXDC1Q155Q3 683 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 KMT5BQ4FZB7 885 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 PLA2G2CQ5R387 149 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 INTS3Q68E01 1043 aaKnown RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 TDRD7Q8NHU6 1098 aaKnown RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 FRAT1Q92837 279 aaPredicted RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 AIDAQ96BJ3 306 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 GBA2Q9HCG7 927 aaPredicted RBP9.28□□□□□ -0.92
NUP88-205ENST00000572809 PSME4Q14997 1843 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 PITPNM2Q9BZ72 1349 aa9.28□□□□□ -0.92
NUP88-205ENST00000572809 EYA2O00167 538 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 ACTN4O43707 911 aaKnown RBP9.27□□□□□ -0.93
NUP88-205ENST00000572809 ADH1BP00325 375 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 DNAJB2P25686 324 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 MAP2K2P36507 400 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 HUNKP57058 714 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 DLGAP5Q15398 846 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 CAVIN4Q5BKX8 364 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 COL13A1Q5TAT6 717 aaPredicted RBP9.27□□□□□ -0.93
NUP88-205ENST00000572809 ATF7IPQ6VMQ6 1270 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 FBXO33Q7Z6M2 555 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 VPS37DQ86XT2 251 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 CERS5Q8N5B7 392 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 CDCA5Q96FF9 252 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 LRRFIP2Q9Y608 721 aaKnown RBP9.27□□□□□ -0.93
NUP88-205ENST00000572809 FAM205AQ6ZU69 1335 aa9.27□□□□□ -0.93
NUP88-205ENST00000572809 F8W031 263 aaPredicted RBP9.26□□□□□ -0.93
NUP88-205ENST00000572809 FOXN1O15353 648 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 AOC2O75106 756 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 FRAT2O75474 233 aaPredicted RBP9.26□□□□□ -0.93
NUP88-205ENST00000572809 GNAI3P08754 354 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 IFIT1P09914 478 aaKnown RBP9.26□□□□□ -0.93
NUP88-205ENST00000572809 TRIM27P14373 513 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 FOXC1Q12948 553 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 RGMBQ6NW40 437 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 VGLL2Q8N8G2 317 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 MTMR14Q8NCE2 650 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 ZBED3Q96IU2 234 aaPredicted RBP9.26□□□□□ -0.93
NUP88-205ENST00000572809 MEIS3Q99687 375 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 DACH1Q9UI36 760 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 SCAF8Q9UPN6 1271 aaKnown RBP9.26□□□□□ -0.93
NUP88-205ENST00000572809 JAG2Q9Y219 1238 aa9.26□□□□□ -0.93
NUP88-205ENST00000572809 FGFR2P21802 821 aa9.25□□□□□ -0.93
NUP88-205ENST00000572809 CTCFP49711 727 aaPredicted RBP9.25□□□□□ -0.93
NUP88-205ENST00000572809 RBM5P52756 815 aaKnown RBP eCLIP9.25□□□□□ -0.93
NUP88-205ENST00000572809 FKBP1BP68106 108 aa9.25□□□□□ -0.93
NUP88-205ENST00000572809 PUM3Q15397 648 aaKnown RBP9.25□□□□□ -0.93
NUP88-205ENST00000572809 CFAP100Q494V2 611 aa9.25□□□□□ -0.93
NUP88-205ENST00000572809 MFSD14BQ5SR56 506 aa9.25□□□□□ -0.93
NUP88-205ENST00000572809 PRAMEF18Q5VWM3 479 aa9.25□□□□□ -0.93
NUP88-205ENST00000572809 ZKSCAN2Q63HK3 967 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms