RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, human

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH11-216	ENST00000569128	SALL4	Q9UJQ4	1053 aa		10.66	□□□□□ -0.7
CDH11-216	ENST00000569128	KNSTRN	Q9Y448	316 aa		10.66	□□□□□ -0.7
CDH11-216	ENST00000569128	KTN1	Q86UP2	1357 aa	Known RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	SMARCA5	O60264	1052 aa	Predicted RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	ERCC5	P28715	1186 aa	Predicted RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	GNA15	P30679	374 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	DAB2	P98082	770 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	HYAL2	Q12891	473 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	NFX1	Q12986	1120 aa	Known RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	BRINP3	Q76B58	766 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	NCAPG2	Q86XI2	1143 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	UBE2O	Q9C0C9	1292 aa	Known RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	MRS2	Q9HD23	443 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	DNAJB12	Q9NXW2	375 aa	Known RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	KLF15	Q9UIH9	416 aa		10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.65	□□□□□ -0.7
CDH11-216	ENST00000569128	POLR3A	O14802	1390 aa	Predicted RBP	10.65	□□□□□ -0.71
CDH11-216	ENST00000569128	ITSN1	Q15811	1721 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	ZBTB42	B2RXF5	422 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	SIN3B	O75182	1162 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	GADD45B	O75293	160 aa	Predicted RBP	10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	EDN3	P14138	238 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	NRL	P54845	237 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	MRPL58	Q14197	206 aa	Known RBP	10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	HFE2	Q6ZVN8	426 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	TMC4	Q7Z404	712 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	SPG7	Q9UQ90	795 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	AKAP12	Q02952	1782 aa		10.64	□□□□□ -0.71
CDH11-216	ENST00000569128	TTC21B	Q7Z4L5	1316 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128		J3QW42	95 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	SCAMP3	O14828	347 aa	Known RBP	10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	FYB1	O15117	783 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	KIF4A	O95239	1232 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	ARAF	P10398	606 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	HOXD8	P13378	290 aa	Predicted RBP	10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	ACPP	P15309	386 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	MAP2K3	P46734	347 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	GPLD1	P80108	840 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	KRT28	Q7Z3Y7	464 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	NME9	Q86XW9	330 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	TRPM4	Q8TD43	1214 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	IRF7	Q92985	503 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	BACH2	Q9BYV9	841 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	AVEN	Q9NQS1	362 aa	Predicted RBP	10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	USP6	P35125	1406 aa		10.63	□□□□□ -0.71
CDH11-216	ENST00000569128	SSH2	Q76I76	1423 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	LOC102724428	A0A0B4J2F2	783 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128		A0A1W2PP55	124 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	NEURL1B	A8MQ27	555 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	SORBS3	O60504	671 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	ADH6	P28332	368 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	SIK1	P57059	783 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	PIP4K2B	P78356	416 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	PEAR1	Q5VY43	1037 aa	Predicted RBP	10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	VTI1B	Q9UEU0	232 aa		10.62	□□□□□ -0.71
CDH11-216	ENST00000569128	MON2	Q7Z3U7	1717 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	EDC4	Q6P2E9	1401 aa	Known RBP	10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	ANP32C	O43423	234 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	FBLN1	P23142	703 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	KRT76	Q01546	638 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	NUTM2G	Q5VZR2	741 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	CNTNAP3B	Q96NU0	1288 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	CNTNAP3	Q9BZ76	1288 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	OSBPL7	Q9BZF2	842 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	GGA1	Q9UJY5	639 aa		10.61	□□□□□ -0.71
CDH11-216	ENST00000569128	CGNL1	Q0VF96	1302 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	TRPA1	O75762	1119 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	FCHSD1	Q86WN1	690 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	CEP120	Q8N960	986 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	TNFRSF25	Q93038	417 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	SPACA7	Q96KW9	195 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	FRMD6	Q96NE9	622 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	ZKSCAN3	Q9BRR0	538 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	BCO2	Q9BYV7	579 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	AK5	Q9Y6K8	562 aa		10.6	□□□□□ -0.71
CDH11-216	ENST00000569128	ADH7	P40394	386 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	TNNT2	P45379	298 aa	Predicted RBP	10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	HDLBP	Q00341	1268 aa	Known RBP	10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	GRM2	Q14416	872 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	PCSK7	Q16549	785 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	CCDC184	Q52MB2	194 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	KIAA0319	Q5VV43	1072 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	NXPE4	Q6UWF7	544 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	FAM35A	Q86V20	835 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	OSMR	Q99650	979 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	EHD4	Q9H223	541 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	SUV39H2	Q9H5I1	410 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	SLC6A14	Q9UN76	642 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	NRK	Q7Z2Y5	1582 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	KIF1A	Q12756	1690 aa		10.59	□□□□□ -0.71
CDH11-216	ENST00000569128	NPC1L1	Q9UHC9	1359 aa		10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	PPM1G	O15355	546 aa	Predicted RBP	10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	TOM1	O60784	492 aa		10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	CPB1	P15086	417 aa		10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	EIF2AK2	P19525	551 aa	Known RBP	10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	EIF4B	P23588	611 aa	Known RBP	10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	SRSF11	Q05519	484 aa	Known RBP	10.58	□□□□□ -0.72
CDH11-216	ENST00000569128	MORC1	Q86VD1	984 aa		10.58	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms